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  5. SymbC1.scaffold541.2

SymbC1.scaffold541.2 (541.2)


Aliases : 541.2

Description : Zinc finger, CCHC-type [Interproscan].


Gene families : OG_01_0000232 (OrthoFinder) Phylogenetic Tree(s): OG0000232_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold541.2
Cluster HCCA: Cluster_280

Target Alias Description ECC score Gene Family Method Actions
SymbC1.scaffold10348.1 10348.1 Zinc finger, CCHC-type [Interproscan]. 0.08 OrthoFinder
SymbC1.scaffold1120.2 1120.2 Zinc finger, CCHC-type [Interproscan]. 0.05 OrthoFinder
SymbC1.scaffold15374.1 15374.1 Zinc finger, CCHC-type [Interproscan]. 0.03 OrthoFinder
SymbC1.scaffold1606.6 1606.6 Zinc finger, CCHC-type; Reverse transcriptase,... 0.07 OrthoFinder
SymbC1.scaffold1910.3 1910.3 Zinc finger, CCHC-type; Reverse transcriptase,... 0.03 OrthoFinder
SymbC1.scaffold2330.3 2330.3 Zinc finger, CCHC-type; Reverse transcriptase,... 0.05 OrthoFinder
SymbC1.scaffold2340.1 2340.1 Reverse transcriptase, RNA-dependent DNA polymerase... 0.07 OrthoFinder
SymbC1.scaffold3230.2 3230.2 Zinc finger, CCHC-type [Interproscan]. 0.08 OrthoFinder
SymbC1.scaffold361.3 361.3 Zinc finger, CCHC-type [Interproscan]. 0.03 OrthoFinder
SymbC1.scaffold383.6 383.6 Zinc finger, CCHC-type; Reverse transcriptase,... 0.04 OrthoFinder
SymbC1.scaffold3862.3 3862.3 Hypothetical protein 0.02 OrthoFinder
SymbC1.scaffold3880.1 3880.1 Zinc finger, CCHC-type; Reverse transcriptase,... 0.06 OrthoFinder
SymbC1.scaffold3995.1 3995.1 Hypothetical protein 0.03 OrthoFinder
SymbC1.scaffold4969.2 4969.2 Zinc finger, CCHC-type; Reverse transcriptase,... 0.03 OrthoFinder
SymbC1.scaffold5287.1 5287.1 Zinc finger, CCHC-type [Interproscan]. 0.04 OrthoFinder
SymbC1.scaffold5752.1 5752.1 Zinc finger, CCHC-type; Reverse transcriptase,... 0.09 OrthoFinder
SymbC1.scaffold6366.1 6366.1 Zinc finger, CCHC-type; Reverse transcriptase,... 0.03 OrthoFinder
SymbC1.scaffold7908.1 7908.1 Zinc finger, CCHC-type; Reverse transcriptase,... 0.02 OrthoFinder
SymbC1.scaffold9224.2 9224.2 Zinc finger, CCHC-type; Reverse transcriptase,... 0.05 OrthoFinder
SymbC1.scaffold9962.1 9962.1 Zinc finger, CCHC-type; Reverse transcriptase,... 0.05 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP Enrichment
MF GO:0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity IEP Enrichment
MF GO:0004150 dihydroneopterin aldolase activity IEP Enrichment
CC GO:0005840 ribosome IEP Enrichment
BP GO:0006412 translation IEP Enrichment
BP GO:0006694 steroid biosynthetic process IEP Enrichment
BP GO:0006760 folic acid-containing compound metabolic process IEP Enrichment
BP GO:0008202 steroid metabolic process IEP Enrichment
MF GO:0016229 steroid dehydrogenase activity IEP Enrichment
MF GO:0016830 carbon-carbon lyase activity IEP Enrichment
MF GO:0033764 steroid dehydrogenase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP Enrichment
BP GO:0043043 peptide biosynthetic process IEP Enrichment
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Enrichment
InterPro domains Description Start Stop
IPR001878 Znf_CCHC 283 297
No external refs found!