SymbC1.scaffold536.3 (536.3)

Aliases : 536.3

Description : Vps4 oligomerisation, C-terminal; NAD-dependent epimerase/dehydratase; AAA ATPase, AAA+ lid domain; ATPase, AAA-type, core [Interproscan].

Gene families : OG_01_0000074 (OrthoFinder) Phylogenetic Tree(s): OG0000074_tree

Sequence : coding (download), protein (download)

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Type	Description	Actions
Neighborhood	HRR: SymbC1.scaffold536.3

Target	Alias	Description	ECC score	Gene Family Method	Actions
Cpa\|evm.model.tig00020830.28	tig00020830_g14409.t1	Katanin p60 ATPase-containing subunit A1 OS=Arabidopsis thaliana	0.01	OrthoFinder
lcl\|LHPG02000005.1_cds_PRW58666.1_8098	PRW58666	ATPase family AAA domain-containing 1-like	0.02	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	IEP	Enrichment
MF	GO:0016614	oxidoreductase activity, acting on CH-OH group of donors	IEP	Enrichment
MF	GO:0016616	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	IEP	Enrichment
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR041569	AAA_lid_3	1322	1374
IPR001509	Epimerase_deHydtase	564	786
IPR015415	Vps4_C	1379	1413
IPR003959	ATPase_AAA_core	1166	1301

External Links

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SymbC1.scaffold536.3 (536.3)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation