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  5. Cpa|evm.model.tig00020610.57

Cpa|evm.model.tig00020610.57 (tig00020610_g12000.t1)


Aliases : tig00020610_g12000.t1

Description : Protein biosynthesis.aminoacyl-tRNA synthetase activities.serine-tRNA ligase


Gene families : OG_01_0002419 (OrthoFinder) Phylogenetic Tree(s): OG0002419_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00020610.57
Cluster HCCA: Cluster_194

Target Alias Description ECC score Gene Family Method Actions
Cre03.g189400 30786696 Protein biosynthesis.aminoacyl-tRNA synthetase... 0.06 OrthoFinder
Dusal.0777s00004.1 33195577 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T);... 0.02 OrthoFinder
OT_08G02010.1 No alias Serine-tRNA synthetase, type1, N-terminal;... 0.02 OrthoFinder
PTI_24G00410.1 No alias Serine-tRNA synthetase, type1, N-terminal;... 0.01 OrthoFinder
Sro251_g099270.1 Contig687.g8007 Serine--tRNA ligase 0.01 OrthoFinder
Sro31_g020380.1 Contig420.g5633 Serine--tRNA ligase 0.04 OrthoFinder
TP09G00290.1 No alias Aminoacyl-tRNA synthetase, class II (G/ P/ S/T);... 0.03 OrthoFinder
lcl|LHPG02000006.1_cds_PRW57840.1_8450 PRW57840 Serine-tRNA ligase 0.04 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEA Interproscan
MF GO:0004812 aminoacyl-tRNA ligase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003682 chromatin binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003743 translation initiation factor activity IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005737 cytoplasm IEP Enrichment
BP GO:0006325 chromatin organization IEP Enrichment
BP GO:0006338 chromatin remodeling IEP Enrichment
BP GO:0006399 tRNA metabolic process IEP Enrichment
BP GO:0006418 tRNA aminoacylation for protein translation IEP Enrichment
BP GO:0006605 protein targeting IEP Enrichment
BP GO:0006612 protein targeting to membrane IEP Enrichment
BP GO:0006613 cotranslational protein targeting to membrane IEP Enrichment
BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEP Enrichment
BP GO:0006886 intracellular protein transport IEP Enrichment
BP GO:0008104 protein localization IEP Enrichment
MF GO:0008135 translation factor activity, RNA binding IEP Enrichment
MF GO:0008312 7S RNA binding IEP Enrichment
BP GO:0015031 protein transport IEP Enrichment
MF GO:0031491 nucleosome binding IEP Enrichment
BP GO:0033036 macromolecule localization IEP Enrichment
BP GO:0033365 protein localization to organelle IEP Enrichment
BP GO:0034613 cellular protein localization IEP Enrichment
BP GO:0043038 amino acid activation IEP Enrichment
BP GO:0043039 tRNA aminoacylation IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
MF GO:0044877 protein-containing complex binding IEP Enrichment
BP GO:0045047 protein targeting to ER IEP Enrichment
MF GO:0045182 translation regulator activity IEP Enrichment
BP GO:0045184 establishment of protein localization IEP Enrichment
BP GO:0046907 intracellular transport IEP Enrichment
BP GO:0051649 establishment of localization in cell IEP Enrichment
BP GO:0051668 localization within membrane IEP Enrichment
BP GO:0070727 cellular macromolecule localization IEP Enrichment
BP GO:0070972 protein localization to endoplasmic reticulum IEP Enrichment
BP GO:0072594 establishment of protein localization to organelle IEP Enrichment
BP GO:0072599 establishment of protein localization to endoplasmic reticulum IEP Enrichment
BP GO:0072657 protein localization to membrane IEP Enrichment
MF GO:0090079 translation regulator activity, nucleic acid binding IEP Enrichment
BP GO:0090150 establishment of protein localization to membrane IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
InterPro domains Description Start Stop
IPR015866 Ser-tRNA-synth_1_N 20 97
IPR002314 aa-tRNA-synt_IIb 206 381
No external refs found!