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  5. SymbC1.scaffold5210.2

SymbC1.scaffold5210.2 (5210.2)


Aliases : 5210.2

Description : Zinc finger, CCHC-type [Interproscan].


Gene families : OG_01_0000509 (OrthoFinder) Phylogenetic Tree(s): OG0000509_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold5210.2

Target Alias Description ECC score Gene Family Method Actions
SymbC1.scaffold10051.2 10051.2 Hypothetical protein 0.06 OrthoFinder
SymbC1.scaffold11931.1 11931.1 Hypothetical protein 0.05 OrthoFinder
SymbC1.scaffold12268.2 12268.2 Hypothetical protein 0.09 OrthoFinder
SymbC1.scaffold1466.3 1466.3 Ankyrin repeat-containing domain [Interproscan]. 0.02 OrthoFinder
SymbC1.scaffold14758.1 14758.1 Hypothetical protein 0.09 OrthoFinder
SymbC1.scaffold15930.2 15930.2 Hypothetical protein 0.07 OrthoFinder
SymbC1.scaffold1806.6 1806.6 Hypothetical protein 0.04 OrthoFinder
SymbC1.scaffold3047.2 3047.2 Hypothetical protein 0.06 OrthoFinder
SymbC1.scaffold35.4 35.4 Hypothetical protein 0.05 OrthoFinder
SymbC1.scaffold4053.2 4053.2 Hypothetical protein 0.04 OrthoFinder
SymbC1.scaffold4229.1 4229.1 Hypothetical protein 0.1 OrthoFinder
SymbC1.scaffold6342.6 6342.6 Hypothetical protein 0.03 OrthoFinder
SymbC1.scaffold6544.1 6544.1 Hypothetical protein 0.09 OrthoFinder
SymbC1.scaffold660.6 660.6 Hypothetical protein 0.09 OrthoFinder
SymbC1.scaffold6802.1 6802.1 Hypothetical protein 0.04 OrthoFinder
SymbC1.scaffold6989.2 6989.2 Hypothetical protein 0.07 OrthoFinder
SymbC1.scaffold834.3 834.3 Hypothetical protein 0.07 OrthoFinder
SymbC1.scaffold9702.2 9702.2 Hypothetical protein 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004356 glutamate-ammonia ligase activity IEP Enrichment
BP GO:0006541 glutamine metabolic process IEP Enrichment
BP GO:0006542 glutamine biosynthetic process IEP Enrichment
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Enrichment
MF GO:0016211 ammonia ligase activity IEP Enrichment
BP GO:0016485 protein processing IEP Enrichment
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Enrichment
MF GO:0016880 acid-ammonia (or amide) ligase activity IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
BP GO:0051604 protein maturation IEP Enrichment
BP GO:0071586 CAAX-box protein processing IEP Enrichment
InterPro domains Description Start Stop
IPR001878 Znf_CCHC 536 550
No external refs found!