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  5. Cpa|evm.model.tig00020610.38

Cpa|evm.model.tig00020610.38 (tig00020610_g11977.t1)


Aliases : tig00020610_g11977.t1

Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU proteome component.RPL11 component


Gene families : OG_01_0003656 (OrthoFinder) Phylogenetic Tree(s): OG0003656_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00020610.38
Cluster HCCA: Cluster_43

Target Alias Description ECC score Gene Family Method Actions
Cre01.g027000 30788418, RPL11 Protein biosynthesis.cytosolic ribosome.large subunit... 0.28 OrthoFinder
Cz06g11020.t1 No alias Ribosomal protein L5, C-terminal; Ribosomal protein L5,... 0.21 OrthoFinder
Dusal.0453s00002.1 33187614 Ribosomal protein L5, C-terminal; Ribosomal protein L5,... 0.16 OrthoFinder
EOD19037 No alias Ribosomal protein L5, C-terminal; Ribosomal protein L5,... 0.11 OrthoFinder
OT_03G04560.1 No alias Ribosomal protein L5, N-terminal; Ribosomal protein L5,... 0.14 OrthoFinder
PTI_23G00120.1 No alias Ribosomal protein L5, C-terminal; Ribosomal protein L5,... 0.26 OrthoFinder
Sro673_g185180.1 Contig1386.g12783 60S ribosomal protein L11 (Fragment) 0.25 OrthoFinder
SymbC1.scaffold3179.1 3179.1 Ribosomal protein L5, N-terminal; Ribosomal protein L5,... 0.05 OrthoFinder
TP04G03730.1 No alias Ribosomal protein L5, C-terminal; Ribosomal protein L5,... 0.23 OrthoFinder
Vocar.0001s0942.1 32885998 Ribosomal protein L5, C-terminal; Ribosomal protein L5,... 0.05 OrthoFinder
XM_002507281.1 MICPUN_89807, 89807 Ribosomal protein L11 (RPL11) 0.13 OrthoFinder
XM_003054784.1 MicpuC2_24004, 24004 Ribosomal protein L5, C-terminal; Ribosomal protein L5,... 0.07 OrthoFinder
lcl|LHPG02000013.1_cds_PRW44393.1_2191 PRW44393 60S ribosomal L11 0.19 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499115.1_8068 KAA8499115 60S ribosomal protein L11-2 0.19 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0001514 selenocysteine incorporation IEP Enrichment
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003735 structural constituent of ribosome IEP Enrichment
MF GO:0003743 translation initiation factor activity IEP Enrichment
MF GO:0003746 translation elongation factor activity IEP Enrichment
MF GO:0003774 motor activity IEP Enrichment
MF GO:0005198 structural molecule activity IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005840 ribosome IEP Enrichment
BP GO:0006412 translation IEP Enrichment
BP GO:0006413 translational initiation IEP Enrichment
BP GO:0006414 translational elongation IEP Enrichment
BP GO:0006417 regulation of translation IEP Enrichment
BP GO:0006451 translational readthrough IEP Enrichment
BP GO:0006518 peptide metabolic process IEP Enrichment
MF GO:0008135 translation factor activity, RNA binding IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
BP GO:0009058 biosynthetic process IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
BP GO:0010608 posttranscriptional regulation of gene expression IEP Enrichment
BP GO:0019538 protein metabolic process IEP Enrichment
BP GO:0032268 regulation of cellular protein metabolic process IEP Enrichment
BP GO:0034248 regulation of cellular amide metabolic process IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
BP GO:0043043 peptide biosynthetic process IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043228 non-membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Enrichment
BP GO:0043603 cellular amide metabolic process IEP Enrichment
BP GO:0043604 amide biosynthetic process IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044249 cellular biosynthetic process IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0044267 cellular protein metabolic process IEP Enrichment
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Enrichment
MF GO:0045182 translation regulator activity IEP Enrichment
BP GO:0051246 regulation of protein metabolic process IEP Enrichment
MF GO:0090079 translation regulator activity, nucleic acid binding IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
BP GO:1901564 organonitrogen compound metabolic process IEP Enrichment
BP GO:1901566 organonitrogen compound biosynthetic process IEP Enrichment
BP GO:1901576 organic substance biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR031309 Ribosomal_L5_C 52 150
No external refs found!