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  5. SymbC1.scaffold5066.1

SymbC1.scaffold5066.1 (5066.1)


Aliases : 5066.1

Description : Polyadenylate-binding protein/Hyperplastic disc protein; RNA recognition motif domain [Interproscan].


Gene families : OG_01_0000841 (OrthoFinder) Phylogenetic Tree(s): OG0000841_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold5066.1
Cluster HCCA: Cluster_45

Target Alias Description ECC score Gene Family Method Actions
SymbC1.scaffold4838.2 4838.2 Polyadenylate-binding protein/Hyperplastic disc protein;... 0.02 OrthoFinder
SymbC1.scaffold497.8 497.8 Polyadenylate-binding protein/Hyperplastic disc protein;... 0.02 OrthoFinder
Transcript_contig_79161 79161 RNA recognition motif domain [Interproscan]. 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0003723 RNA binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000221 vacuolar proton-transporting V-type ATPase, V1 domain IEP Enrichment
BP GO:0000375 RNA splicing, via transesterification reactions IEP Enrichment
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Enrichment
BP GO:0000398 mRNA splicing, via spliceosome IEP Enrichment
MF GO:0003852 2-isopropylmalate synthase activity IEP Enrichment
MF GO:0004489 methylenetetrahydrofolate reductase (NAD(P)H) activity IEP Enrichment
BP GO:0006397 mRNA processing IEP Enrichment
BP GO:0006464 cellular protein modification process IEP Enrichment
BP GO:0006468 protein phosphorylation IEP Enrichment
BP GO:0006536 glutamate metabolic process IEP Enrichment
BP GO:0006537 glutamate biosynthetic process IEP Enrichment
BP GO:0006551 leucine metabolic process IEP Enrichment
BP GO:0006793 phosphorus metabolic process IEP Enrichment
BP GO:0006796 phosphate-containing compound metabolic process IEP Enrichment
BP GO:0008380 RNA splicing IEP Enrichment
BP GO:0009098 leucine biosynthetic process IEP Enrichment
MF GO:0015399 primary active transmembrane transporter activity IEP Enrichment
MF GO:0015930 glutamate synthase activity IEP Enrichment
MF GO:0017069 snRNA binding IEP Enrichment
MF GO:0017070 U6 snRNA binding IEP Enrichment
MF GO:0019829 ATPase-coupled cation transmembrane transporter activity IEP Enrichment
MF GO:0030623 U5 snRNA binding IEP Enrichment
CC GO:0033180 proton-transporting V-type ATPase, V1 domain IEP Enrichment
BP GO:0036211 protein modification process IEP Enrichment
MF GO:0042625 ATPase-coupled ion transmembrane transporter activity IEP Enrichment
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP Enrichment
BP GO:0043412 macromolecule modification IEP Enrichment
BP GO:0043650 dicarboxylic acid biosynthetic process IEP Enrichment
BP GO:0044267 cellular protein metabolic process IEP Enrichment
MF GO:0044769 ATPase activity, coupled to transmembrane movement of ions, rotational mechanism IEP Enrichment
MF GO:0046961 proton-transporting ATPase activity, rotational mechanism IEP Enrichment
InterPro domains Description Start Stop
IPR000504 RRM_dom 165 222
IPR000504 RRM_dom 277 345
IPR000504 RRM_dom 2 57
IPR000504 RRM_dom 76 144
IPR002004 PABP_HYD 486 527
No external refs found!