SymbC1.scaffold5.127 (5.127)


Aliases : 5.127

Description : Protein of unknown function DUF1501; Domain of unknown function DUF1553; Domain of unknown function DUF1549; DNA-binding HTH domain, TetR-type; Cytochrome C, Planctomycete-type; TfoX, C-terminal [Interproscan].


Gene families : OG_01_0000096 (OrthoFinder) Phylogenetic Tree(s): OG0000096_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold5.127

Target Alias Description ECC score Gene Family Method Actions
SymbC1.scaffold1.1281 1.1281 Protein of unknown function DUF1501 [Interproscan]. 0.02 OrthoFinder
SymbC1.scaffold1.2384 1.2384 Protein of unknown function DUF1501; Transposase... 0.03 OrthoFinder
SymbC1.scaffold1.876 1.876 Domain of unknown function DUF1553;... 0.02 OrthoFinder
SymbC1.scaffold14729.2 14729.2 Hypothetical protein 0.02 OrthoFinder
SymbC1.scaffold16.366 16.366 Domain of unknown function DUF1549; Domain of unknown... 0.02 OrthoFinder
SymbC1.scaffold17.122 17.122 Domain of unknown function DUF1549; Domain of unknown... 0.03 OrthoFinder
SymbC1.scaffold2.1175 2.1175 Alpha/beta hydrolase fold-3; Protein of unknown function... 0.03 OrthoFinder
SymbC1.scaffold21255.1 21255.1 Domain of unknown function DUF1549; Cytochrome C,... 0.02 OrthoFinder
SymbC1.scaffold22185.2 22185.2 Protein of unknown function DUF1501 [Interproscan]. 0.03 OrthoFinder
SymbC1.scaffold22759.1 22759.1 Domain of unknown function DUF1549; Protein of unknown... 0.02 OrthoFinder
SymbC1.scaffold27890.1 27890.1 Domain of unknown function DUF1553 [Interproscan]. 0.03 OrthoFinder
SymbC1.scaffold29887.1 29887.1 Domain of unknown function DUF1553 [Interproscan]. 0.02 OrthoFinder
SymbC1.scaffold32.53 32.53 Protein of unknown function DUF1501; Domain of unknown... 0.03 OrthoFinder
SymbC1.scaffold37281.1 37281.1 Domain of unknown function DUF1549; Cytochrome C,... 0.02 OrthoFinder
SymbC1.scaffold38781.1 38781.1 Protein of unknown function DUF1501 [Interproscan]. 0.02 OrthoFinder
SymbC1.scaffold9.269 9.269 Protein of unknown function DUF1501; Domain of unknown... 0.04 OrthoFinder
SymbC1.scaffold9.473 9.473 Protein of unknown function DUF1501; Domain of unknown... 0.05 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR022655 DUF1553 1332 1587
IPR011444 DUF1549 826 1032
IPR007077 TfoX_C 2160 2237
IPR010869 DUF1501 1663 2088
IPR001647 HTH_TetR 2248 2294
IPR011429 Cyt_c_Planctomycete-type 719 777
No external refs found!