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  5. SymbC1.scaffold5.127

SymbC1.scaffold5.127 (5.127)


Aliases : 5.127

Description : Protein of unknown function DUF1501; Domain of unknown function DUF1553; Domain of unknown function DUF1549; DNA-binding HTH domain, TetR-type; Cytochrome C, Planctomycete-type; TfoX, C-terminal [Interproscan].


Gene families : OG_01_0000096 (OrthoFinder) Phylogenetic Tree(s): OG0000096_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold5.127

Target Alias Description ECC score Gene Family Method Actions
SymbC1.scaffold1.1281 1.1281 Protein of unknown function DUF1501 [Interproscan]. 0.02 OrthoFinder
SymbC1.scaffold1.2384 1.2384 Protein of unknown function DUF1501; Transposase... 0.03 OrthoFinder
SymbC1.scaffold1.876 1.876 Domain of unknown function DUF1553;... 0.02 OrthoFinder
SymbC1.scaffold14729.2 14729.2 Hypothetical protein 0.02 OrthoFinder
SymbC1.scaffold16.366 16.366 Domain of unknown function DUF1549; Domain of unknown... 0.02 OrthoFinder
SymbC1.scaffold17.122 17.122 Domain of unknown function DUF1549; Domain of unknown... 0.03 OrthoFinder
SymbC1.scaffold2.1175 2.1175 Alpha/beta hydrolase fold-3; Protein of unknown function... 0.03 OrthoFinder
SymbC1.scaffold21255.1 21255.1 Domain of unknown function DUF1549; Cytochrome C,... 0.02 OrthoFinder
SymbC1.scaffold22185.2 22185.2 Protein of unknown function DUF1501 [Interproscan]. 0.03 OrthoFinder
SymbC1.scaffold22759.1 22759.1 Domain of unknown function DUF1549; Protein of unknown... 0.02 OrthoFinder
SymbC1.scaffold27890.1 27890.1 Domain of unknown function DUF1553 [Interproscan]. 0.03 OrthoFinder
SymbC1.scaffold29887.1 29887.1 Domain of unknown function DUF1553 [Interproscan]. 0.02 OrthoFinder
SymbC1.scaffold32.53 32.53 Protein of unknown function DUF1501; Domain of unknown... 0.03 OrthoFinder
SymbC1.scaffold37281.1 37281.1 Domain of unknown function DUF1549; Cytochrome C,... 0.02 OrthoFinder
SymbC1.scaffold38781.1 38781.1 Protein of unknown function DUF1501 [Interproscan]. 0.02 OrthoFinder
SymbC1.scaffold9.269 9.269 Protein of unknown function DUF1501; Domain of unknown... 0.04 OrthoFinder
SymbC1.scaffold9.473 9.473 Protein of unknown function DUF1501; Domain of unknown... 0.05 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR022655 DUF1553 1332 1587
IPR011444 DUF1549 826 1032
IPR007077 TfoX_C 2160 2237
IPR010869 DUF1501 1663 2088
IPR001647 HTH_TetR 2248 2294
IPR011429 Cyt_c_Planctomycete-type 719 777
No external refs found!