SymbC1.scaffold4838.2 (4838.2)

Aliases : 4838.2

Description : Polyadenylate-binding protein/Hyperplastic disc protein; RNA recognition motif domain [Interproscan].

Gene families : OG_01_0000841 (OrthoFinder) Phylogenetic Tree(s): OG0000841_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type Description Actions
Neighborhood HRR: SymbC1.scaffold4838.2
Cluster HCCA: Cluster_30

Target Alias Description ECC score Gene Family Method Actions
Cz06g19170.t1 No alias Polyadenylate-binding protein/Hyperplastic disc protein;... 0.01 OrthoFinder
SymbC1.scaffold5066.1 5066.1 Polyadenylate-binding protein/Hyperplastic disc protein;... 0.02 OrthoFinder
lcl|BLLF01000087.1_cds_GFH07309.1_1786 HaLaN_02092, GFH07309 Polyadenylate-binding protein 0.02 OrthoFinder
lcl|BLLF01000266.1_cds_GFH09816.1_4293 HaLaN_05031, GFH09816 Polyadenylate-binding protein 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0003723 RNA binding IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0004112 cyclic-nucleotide phosphodiesterase activity IEP Enrichment
MF GO:0004114 3',5'-cyclic-nucleotide phosphodiesterase activity IEP Enrichment
MF GO:0004451 isocitrate lyase activity IEP Enrichment
MF GO:0005509 calcium ion binding IEP Enrichment
MF GO:0008081 phosphoric diester hydrolase activity IEP Enrichment
MF GO:0016833 oxo-acid-lyase activity IEP Enrichment
MF GO:0046912 acyltransferase, acyl groups converted into alkyl on transfer IEP Enrichment
InterPro domains Description Start Stop
IPR000504 RRM_dom 4 39
IPR002004 PABP_HYD 232 298
No external refs found!