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  5. SymbC1.scaffold4815.1

SymbC1.scaffold4815.1 (4815.1)


Aliases : 4815.1

Description : Glycosyl hydrolase, family 13, catalytic domain; Glycosyl transferase, family 1; Glycosyltransferase subfamily 4-like, N-terminal domain; Alpha-amylase/branching enzyme, C-terminal all beta; Glycoside hydrolase, family 13, N-terminal [Interproscan].


Gene families : OG_01_0000579 (OrthoFinder) Phylogenetic Tree(s): OG0000579_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold4815.1
Cluster HCCA: Cluster_75

Target Alias Description ECC score Gene Family Method Actions
Cre10.g444700 30790834, SBE3 Carbohydrate metabolism.starch... 0.02 OrthoFinder
OT_03G00880.1 No alias Glycoside hydrolase, family 13, N-terminal; Glycosyl... 0.02 OrthoFinder
Transcript_contig_54516 54516 Glycoside hydrolase, family 13, N-terminal; Glycosyl... 0.01 OrthoFinder
Vocar.0026s0071.1 32892436 Glycosyl hydrolase, family 13, catalytic domain;... 0.01 OrthoFinder
lcl|LHPG02000009.1_cds_PRW56052.1_10358 PRW56052 Starch branching enzyme 0.01 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8497243.1_972 KAA8497243 1,4-alpha-glucan-branching enzyme 2-1, chloroplastic/amyloplastic 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEA Interproscan
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEA Interproscan
BP GO:0005975 carbohydrate metabolic process IEA Interproscan
MF GO:0043169 cation binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004112 cyclic-nucleotide phosphodiesterase activity IEP Enrichment
MF GO:0004114 3',5'-cyclic-nucleotide phosphodiesterase activity IEP Enrichment
MF GO:0004620 phospholipase activity IEP Enrichment
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Enrichment
MF GO:0009678 pyrophosphate hydrolysis-driven proton transmembrane transporter activity IEP Enrichment
MF GO:0015399 primary active transmembrane transporter activity IEP Enrichment
MF GO:0016298 lipase activity IEP Enrichment
MF GO:0016851 magnesium chelatase activity IEP Enrichment
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Enrichment
MF GO:0032977 membrane insertase activity IEP Enrichment
MF GO:0051002 ligase activity, forming nitrogen-metal bonds IEP Enrichment
MF GO:0051003 ligase activity, forming nitrogen-metal bonds, forming coordination complexes IEP Enrichment
MF GO:0140104 molecular carrier activity IEP Enrichment
MF GO:0140597 protein carrier activity IEP Enrichment
InterPro domains Description Start Stop
IPR028098 Glyco_trans_4-like_N 1201 1376
IPR006047 Glyco_hydro_13_cat_dom 21 90
IPR001296 Glyco_trans_1 1392 1536
IPR004193 Glyco_hydro_13_N 760 833
IPR006048 A-amylase/branching_C 1707 1788
IPR006048 A-amylase/branching_C 422 515
No external refs found!