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  5. SymbC1.scaffold4707.6

SymbC1.scaffold4707.6 (4707.6)


Aliases : 4707.6

Description : LDLR class B repeat [Interproscan].


Gene families : OG_01_0002003 (OrthoFinder) Phylogenetic Tree(s): OG0002003_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold4707.6
Cluster HCCA: Cluster_30

Target Alias Description ECC score Gene Family Method Actions
SymbC1.scaffold5082.2 5082.2 Poly(ADP-ribose) polymerase, catalytic domain; Aprataxin... 0.03 OrthoFinder
SymbC1.scaffold6054.2 6054.2 Poly(ADP-ribose) polymerase, catalytic domain [Interproscan]. 0.03 OrthoFinder
SymbC1.scaffold645.10 645.10 Poly(ADP-ribose) polymerase, catalytic domain [Interproscan]. 0.03 OrthoFinder
SymbC1.scaffold742.8 742.8 Poly(ADP-ribose) polymerase, catalytic domain [Interproscan]. 0.03 OrthoFinder
SymbC1.scaffold822.5 822.5 Poly(ADP-ribose) polymerase, catalytic domain; LDLR... 0.03 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004451 isocitrate lyase activity IEP Enrichment
MF GO:0005509 calcium ion binding IEP Enrichment
CC GO:0005875 microtubule associated complex IEP Enrichment
BP GO:0006886 intracellular protein transport IEP Enrichment
BP GO:0008104 protein localization IEP Enrichment
MF GO:0010181 FMN binding IEP Enrichment
BP GO:0015031 protein transport IEP Enrichment
BP GO:0016192 vesicle-mediated transport IEP Enrichment
MF GO:0016833 oxo-acid-lyase activity IEP Enrichment
CC GO:0030117 membrane coat IEP Enrichment
CC GO:0030286 dynein complex IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
BP GO:0033036 macromolecule localization IEP Enrichment
BP GO:0045184 establishment of protein localization IEP Enrichment
BP GO:0046907 intracellular transport IEP Enrichment
BP GO:0051641 cellular localization IEP Enrichment
BP GO:0051649 establishment of localization in cell IEP Enrichment
BP GO:0071702 organic substance transport IEP Enrichment
BP GO:0071705 nitrogen compound transport IEP Enrichment
InterPro domains Description Start Stop
IPR000033 LDLR_classB_rpt 39 81
No external refs found!