SymbC1.scaffold451.2 (451.2)

Aliases : 451.2

Description : ATPase, AAA-type, core; Ribosome biogenesis protein BMS1/TSR1, C-terminal; AARP2CN [Interproscan].

Gene families : OG_01_0003800 (OrthoFinder) Phylogenetic Tree(s): OG0003800_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: SymbC1.scaffold451.2
Cluster	HCCA: Cluster_109

Target	Alias	Description	ECC score	Gene Family Method
Cpa\|evm.model.tig00000478.23	tig00000478_g1271.t1	No description available	0.01	OrthoFinder
EOD33430	No alias	AARP2CN; Ribosome biogenesis protein BMS1/TSR1,...	0.01	OrthoFinder
EOD34823	No alias	Hypothetical protein [Ensembl].	0.01	OrthoFinder
PTI_01G05840.1	No alias	Ribosome biogenesis protein BMS1/TSR1, C-terminal;...	0.02	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
BP	GO:0022613	ribonucleoprotein complex biogenesis	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
BP	GO:0042254	ribosome biogenesis	IEA	Interproscan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044085	cellular component biogenesis	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0015399	primary active transmembrane transporter activity	IEP	Enrichment
MF	GO:0016853	isomerase activity	IEP	Enrichment
MF	GO:0016854	racemase and epimerase activity	IEP	Enrichment
MF	GO:0016855	racemase and epimerase activity, acting on amino acids and derivatives	IEP	Enrichment
MF	GO:0036361	racemase activity, acting on amino acids and derivatives	IEP	Enrichment
MF	GO:0042626	ATPase-coupled transmembrane transporter activity	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR012948	AARP2CN	200	282
IPR007034	BMS1_TSR1_C	524	803
IPR003959	ATPase_AAA_core	55	124

External Links

No external refs found!