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  5. SymbC1.scaffold4495.1

SymbC1.scaffold4495.1 (4495.1)


Aliases : 4495.1

Description : Zinc finger, CCHC-type; Reverse transcriptase, RNA-dependent DNA polymerase [Interproscan].


Gene families : OG_01_0000232 (OrthoFinder) Phylogenetic Tree(s): OG0000232_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold4495.1
Cluster HCCA: Cluster_159

Target Alias Description ECC score Gene Family Method Actions
SymbC1.scaffold15374.1 15374.1 Zinc finger, CCHC-type [Interproscan]. 0.01 OrthoFinder
SymbC1.scaffold1606.6 1606.6 Zinc finger, CCHC-type; Reverse transcriptase,... 0.01 OrthoFinder
SymbC1.scaffold189.5 189.5 Reverse transcriptase, RNA-dependent DNA polymerase... 0.01 OrthoFinder
SymbC1.scaffold2314.3 2314.3 Zinc finger, CCHC-type; Reverse transcriptase,... 0.01 OrthoFinder
SymbC1.scaffold2340.1 2340.1 Reverse transcriptase, RNA-dependent DNA polymerase... 0.03 OrthoFinder
SymbC1.scaffold3230.2 3230.2 Zinc finger, CCHC-type [Interproscan]. 0.01 OrthoFinder
SymbC1.scaffold361.3 361.3 Zinc finger, CCHC-type [Interproscan]. 0.01 OrthoFinder
SymbC1.scaffold3880.1 3880.1 Zinc finger, CCHC-type; Reverse transcriptase,... 0.02 OrthoFinder
SymbC1.scaffold3995.1 3995.1 Hypothetical protein 0.01 OrthoFinder
SymbC1.scaffold4969.2 4969.2 Zinc finger, CCHC-type; Reverse transcriptase,... 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000155 phosphorelay sensor kinase activity IEP Enrichment
BP GO:0000160 phosphorelay signal transduction system IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0004672 protein kinase activity IEP Enrichment
MF GO:0004673 protein histidine kinase activity IEP Enrichment
BP GO:0006109 regulation of carbohydrate metabolic process IEP Enrichment
BP GO:0006401 RNA catabolic process IEP Enrichment
BP GO:0006402 mRNA catabolic process IEP Enrichment
BP GO:0007165 signal transduction IEP Enrichment
BP GO:0009056 catabolic process IEP Enrichment
BP GO:0009057 macromolecule catabolic process IEP Enrichment
BP GO:0009892 negative regulation of metabolic process IEP Enrichment
BP GO:0010468 regulation of gene expression IEP Enrichment
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Enrichment
BP GO:0010629 negative regulation of gene expression IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016071 mRNA metabolic process IEP Enrichment
MF GO:0016775 phosphotransferase activity, nitrogenous group as acceptor IEP Enrichment
BP GO:0019222 regulation of metabolic process IEP Enrichment
BP GO:0019439 aromatic compound catabolic process IEP Enrichment
BP GO:0034655 nucleobase-containing compound catabolic process IEP Enrichment
BP GO:0035556 intracellular signal transduction IEP Enrichment
BP GO:0044248 cellular catabolic process IEP Enrichment
BP GO:0044265 cellular macromolecule catabolic process IEP Enrichment
BP GO:0044270 cellular nitrogen compound catabolic process IEP Enrichment
BP GO:0046700 heterocycle catabolic process IEP Enrichment
BP GO:0048519 negative regulation of biological process IEP Enrichment
BP GO:0060255 regulation of macromolecule metabolic process IEP Enrichment
BP GO:0080090 regulation of primary metabolic process IEP Enrichment
MF GO:0140299 small molecule sensor activity IEP Enrichment
BP GO:1901361 organic cyclic compound catabolic process IEP Enrichment
BP GO:1901575 organic substance catabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR001878 Znf_CCHC 257 271
IPR013103 RVT_2 1247 1477
No external refs found!