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  5. SymbC1.scaffold449.5

SymbC1.scaffold449.5 (449.5)


Aliases : 449.5

Description : Zinc finger, RING-type [Interproscan].


Gene families : OG_01_0000005 (OrthoFinder) Phylogenetic Tree(s): OG0000005_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold449.5
Cluster HCCA: Cluster_49

Target Alias Description ECC score Gene Family Method Actions
Cz09g32100.t1 No alias Zinc finger, RING-type [Interproscan]. 0.01 OrthoFinder
Cz10g05080.t1 No alias Zinc finger, RING-type [Interproscan]. 0.01 OrthoFinder
Cz12g01140.t1 No alias Zinc finger, RING-type [Interproscan]. 0.01 OrthoFinder
PTI_04G03910.1 No alias Zinc finger, RING-type [Interproscan]. 0.03 OrthoFinder
SymbC1.scaffold125.12 125.12 Zinc finger, RING-type [Interproscan]. 0.02 OrthoFinder
TP07G00310.1 No alias Zinc finger, RING-type [Interproscan]. 0.04 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8498945.1_7898 KAA8498945 E3 ubiquitin-protein ligase 0.02 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8495830.1_1828 KAA8495830 Putative E3 ubiquitin-protein ligase RHC1A 0.02 OrthoFinder
lcl|VRMN01000005.1_cds_KAA8494124.1_3988 KAA8494124 E3 ubiquitin-protein ligase ATL9 0.01 OrthoFinder
lcl|VRMN01000008.1_cds_KAA8492818.1_2554 KAA8492818 RING finger protein 24 0.01 OrthoFinder
lcl|VRMN01000010.1_cds_KAA8492115.1_5298 KAA8492115 E3 ubiquitin-protein ligase SDIR1 0.02 OrthoFinder
lcl|VRMN01000011.1_cds_KAA8491771.1_4779 KAA8491771 E3 ubiquitin-protein ligase RING1 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003968 RNA-directed 5'-3' RNA polymerase activity IEP Enrichment
MF GO:0004611 phosphoenolpyruvate carboxykinase activity IEP Enrichment
BP GO:0006099 tricarboxylic acid cycle IEP Enrichment
MF GO:0008964 phosphoenolpyruvate carboxylase activity IEP Enrichment
BP GO:0015977 carbon fixation IEP Enrichment
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Enrichment
MF GO:0016779 nucleotidyltransferase activity IEP Enrichment
MF GO:0016830 carbon-carbon lyase activity IEP Enrichment
MF GO:0016831 carboxy-lyase activity IEP Enrichment
MF GO:0034062 5'-3' RNA polymerase activity IEP Enrichment
MF GO:0097747 RNA polymerase activity IEP Enrichment
InterPro domains Description Start Stop
IPR001841 Znf_RING 158 200
No external refs found!