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  5. SymbC1.scaffold4353.2

SymbC1.scaffold4353.2 (4353.2)


Aliases : 4353.2

Description : Zinc finger, CCHC-type; Reverse transcriptase, RNA-dependent DNA polymerase [Interproscan].


Gene families : OG_01_0000232 (OrthoFinder) Phylogenetic Tree(s): OG0000232_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold4353.2
Cluster HCCA: Cluster_117

Target Alias Description ECC score Gene Family Method Actions
SymbC1.scaffold10348.1 10348.1 Zinc finger, CCHC-type [Interproscan]. 0.03 OrthoFinder
SymbC1.scaffold1120.2 1120.2 Zinc finger, CCHC-type [Interproscan]. 0.02 OrthoFinder
SymbC1.scaffold1606.6 1606.6 Zinc finger, CCHC-type; Reverse transcriptase,... 0.03 OrthoFinder
SymbC1.scaffold1910.3 1910.3 Zinc finger, CCHC-type; Reverse transcriptase,... 0.02 OrthoFinder
SymbC1.scaffold2340.1 2340.1 Reverse transcriptase, RNA-dependent DNA polymerase... 0.04 OrthoFinder
SymbC1.scaffold3230.2 3230.2 Zinc finger, CCHC-type [Interproscan]. 0.04 OrthoFinder
SymbC1.scaffold383.6 383.6 Zinc finger, CCHC-type; Reverse transcriptase,... 0.02 OrthoFinder
SymbC1.scaffold3862.3 3862.3 Hypothetical protein 0.06 OrthoFinder
SymbC1.scaffold5672.4 5672.4 Zinc finger, CCHC-type; Reverse transcriptase,... 0.07 OrthoFinder
SymbC1.scaffold9962.1 9962.1 Zinc finger, CCHC-type; Reverse transcriptase,... 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004519 endonuclease activity IEP Enrichment
MF GO:0004521 endoribonuclease activity IEP Enrichment
MF GO:0004523 RNA-DNA hybrid ribonuclease activity IEP Enrichment
MF GO:0004540 ribonuclease activity IEP Enrichment
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP Enrichment
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Enrichment
InterPro domains Description Start Stop
IPR001878 Znf_CCHC 361 376
IPR013103 RVT_2 785 1027
No external refs found!