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  5. SymbC1.scaffold4327.2

SymbC1.scaffold4327.2 (4327.2)


Aliases : 4327.2

Description : Tubulin/FtsZ, GTPase domain; Reverse transcriptase domain; Tubulin/FtsZ, 2-layer sandwich domain [Interproscan].


Gene families : OG_01_0001157 (OrthoFinder) Phylogenetic Tree(s): OG0001157_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold4327.2
Cluster HCCA: Cluster_94

Target Alias Description ECC score Gene Family Method Actions
EOD11672 No alias Beta tubulin [Ensembl]. 0.01 OrthoFinder
EOD12626 No alias Tubulin/FtsZ, 2-layer sandwich domain; Tubulin/FtsZ,... 0.03 OrthoFinder
EOD18865 No alias Tubulin/FtsZ, 2-layer sandwich domain; Tubulin/FtsZ,... 0.03 OrthoFinder
lcl|LHPG02000001.1_cds_PRW61116.1_277 PRW61116 Tubulin beta chain 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000255 allantoin metabolic process IEP Enrichment
BP GO:0000256 allantoin catabolic process IEP Enrichment
BP GO:0000375 RNA splicing, via transesterification reactions IEP Enrichment
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Enrichment
BP GO:0000398 mRNA splicing, via spliceosome IEP Enrichment
CC GO:0000776 kinetochore IEP Enrichment
MF GO:0004743 pyruvate kinase activity IEP Enrichment
MF GO:0005509 calcium ion binding IEP Enrichment
CC GO:0005783 endoplasmic reticulum IEP Enrichment
BP GO:0006090 pyruvate metabolic process IEP Enrichment
BP GO:0006096 glycolytic process IEP Enrichment
BP GO:0006165 nucleoside diphosphate phosphorylation IEP Enrichment
BP GO:0006397 mRNA processing IEP Enrichment
BP GO:0006457 protein folding IEP Enrichment
BP GO:0006757 ATP generation from ADP IEP Enrichment
MF GO:0008017 microtubule binding IEP Enrichment
BP GO:0008380 RNA splicing IEP Enrichment
BP GO:0009056 catabolic process IEP Enrichment
BP GO:0009132 nucleoside diphosphate metabolic process IEP Enrichment
BP GO:0009135 purine nucleoside diphosphate metabolic process IEP Enrichment
BP GO:0009179 purine ribonucleoside diphosphate metabolic process IEP Enrichment
BP GO:0009185 ribonucleoside diphosphate metabolic process IEP Enrichment
MF GO:0015631 tubulin binding IEP Enrichment
BP GO:0016071 mRNA metabolic process IEP Enrichment
MF GO:0016840 carbon-nitrogen lyase activity IEP Enrichment
MF GO:0016842 amidine-lyase activity IEP Enrichment
MF GO:0030955 potassium ion binding IEP Enrichment
CC GO:0031262 Ndc80 complex IEP Enrichment
MF GO:0031420 alkali metal ion binding IEP Enrichment
MF GO:0043169 cation binding IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0043605 cellular amide catabolic process IEP Enrichment
BP GO:0044270 cellular nitrogen compound catabolic process IEP Enrichment
BP GO:0046031 ADP metabolic process IEP Enrichment
BP GO:0046700 heterocycle catabolic process IEP Enrichment
MF GO:0046872 metal ion binding IEP Enrichment
BP GO:0046939 nucleotide phosphorylation IEP Enrichment
MF GO:0050385 ureidoglycolate lyase activity IEP Enrichment
MF GO:0051082 unfolded protein binding IEP Enrichment
CC GO:0099080 supramolecular complex IEP Enrichment
BP GO:1901361 organic cyclic compound catabolic process IEP Enrichment
BP GO:1901565 organonitrogen compound catabolic process IEP Enrichment
BP GO:1901575 organic substance catabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR000477 RT_dom 1383 1605
IPR003008 Tubulin_FtsZ_GTPase 3 211
IPR018316 Tubulin/FtsZ_2-layer-sand-dom 261 382
No external refs found!