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  5. SymbC1.scaffold4316.1

SymbC1.scaffold4316.1 (4316.1)


Aliases : 4316.1

Description : DEAD/DEAH box helicase domain; Helicase, C-terminal; WW domain; Pyridoxal-phosphate dependent enzyme [Interproscan].


Gene families : OG_01_0000727 (OrthoFinder) Phylogenetic Tree(s): OG0000727_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold4316.1
Cluster HCCA: Cluster_169

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00001339.22 tig00001339_g8278.t1 RNA processing.RNA quality control Exon Junction complex... 0.03 OrthoFinder
EOD13868 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.01 OrthoFinder
EOD40842 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.01 OrthoFinder
OT_12G03020.1 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.02 OrthoFinder
Transcript_contig_54730 54730 Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.01 OrthoFinder
lcl|LHPG02000002.1_cds_PRW60850.1_4302 PRW60850 Eukaryotic initiation factor 4A-3 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP Enrichment
MF GO:0003777 microtubule motor activity IEP Enrichment
MF GO:0004386 helicase activity IEP Enrichment
MF GO:0004743 pyruvate kinase activity IEP Enrichment
MF GO:0005319 lipid transporter activity IEP Enrichment
CC GO:0005956 protein kinase CK2 complex IEP Enrichment
BP GO:0006090 pyruvate metabolic process IEP Enrichment
BP GO:0006096 glycolytic process IEP Enrichment
BP GO:0006165 nucleoside diphosphate phosphorylation IEP Enrichment
BP GO:0006757 ATP generation from ADP IEP Enrichment
BP GO:0006869 lipid transport IEP Enrichment
BP GO:0007017 microtubule-based process IEP Enrichment
BP GO:0007018 microtubule-based movement IEP Enrichment
MF GO:0008017 microtubule binding IEP Enrichment
MF GO:0008092 cytoskeletal protein binding IEP Enrichment
BP GO:0009132 nucleoside diphosphate metabolic process IEP Enrichment
BP GO:0009135 purine nucleoside diphosphate metabolic process IEP Enrichment
BP GO:0009179 purine ribonucleoside diphosphate metabolic process IEP Enrichment
BP GO:0009185 ribonucleoside diphosphate metabolic process IEP Enrichment
MF GO:0015631 tubulin binding IEP Enrichment
BP GO:0016310 phosphorylation IEP Enrichment
MF GO:0019207 kinase regulator activity IEP Enrichment
MF GO:0019887 protein kinase regulator activity IEP Enrichment
MF GO:0030955 potassium ion binding IEP Enrichment
MF GO:0031420 alkali metal ion binding IEP Enrichment
BP GO:0046031 ADP metabolic process IEP Enrichment
BP GO:0046939 nucleotide phosphorylation IEP Enrichment
BP GO:0061024 membrane organization IEP Enrichment
BP GO:0120009 intermembrane lipid transfer IEP Enrichment
MF GO:0120013 lipid transfer activity IEP Enrichment
CC GO:0140535 intracellular protein-containing complex IEP Enrichment
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 300 461
IPR001926 PLP-dep 1031 1335
IPR001202 WW_dom 30 59
IPR001650 Helicase_C 501 609
No external refs found!