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  5. SymbC1.scaffold4308.2

SymbC1.scaffold4308.2 (4308.2)


Aliases : 4308.2

Description : Proteasome, subunit alpha/beta; Proteasome alpha-subunit, N-terminal domain [Interproscan].


Gene families : OG_01_0002071 (OrthoFinder) Phylogenetic Tree(s): OG0002071_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold4308.2
Cluster HCCA: Cluster_51

Target Alias Description ECC score Gene Family Method Actions
Cre06.g304300 30779553, POA6 Protein degradation.26S proteasome.20S core... 0.01 OrthoFinder
Cz08g17010.t1 No alias Proteasome, subunit alpha/beta; Proteasome... 0.01 OrthoFinder
OT_02G01370.1 No alias Proteasome alpha-subunit, N-terminal domain; Proteasome,... 0.01 OrthoFinder
PTI_08G04270.1 No alias Proteasome, subunit alpha/beta; Proteasome... 0.01 OrthoFinder
PTI_08G04350.1 No alias Proteasome, subunit alpha/beta; Proteasome... 0.01 OrthoFinder
Sro17_g012260.1 Contig269.g3405 Proteasome subunit alpha type-1 0.02 OrthoFinder
TP06G02620.1 No alias Proteasome, subunit alpha/beta; Proteasome... 0.01 OrthoFinder
XM_002507301.1 MICPUN_55518, 55518 Proteasome subunit alpha type-1-b (PAF2) 0.01 OrthoFinder
XM_003056449.1 MicpuC2_55575, 55575 Proteasome subunit alpha type-1-b (PAF2) 0.01 OrthoFinder
lcl|LHPG02000019.1_cds_PRW32598.1_4029 PRW32598 Proteasome subunit alpha type-1-B-like isoform A 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0004175 endopeptidase activity IEA Interproscan
MF GO:0004298 threonine-type endopeptidase activity IEA Interproscan
CC GO:0005839 proteasome core complex IEA Interproscan
BP GO:0006511 ubiquitin-dependent protein catabolic process IEA Interproscan
CC GO:0019773 proteasome core complex, alpha-subunit complex IEA Interproscan
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP Enrichment
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Enrichment
MF GO:0016830 carbon-carbon lyase activity IEP Enrichment
MF GO:0016832 aldehyde-lyase activity IEP Enrichment
MF GO:0016859 cis-trans isomerase activity IEP Enrichment
BP GO:0018193 peptidyl-amino acid modification IEP Enrichment
BP GO:0018208 peptidyl-proline modification IEP Enrichment
InterPro domains Description Start Stop
IPR001353 Proteasome_sua/b 22 208
IPR000426 Proteasome_asu_N 2 21
No external refs found!