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  5. SymbC1.scaffold4237.3

SymbC1.scaffold4237.3 (4237.3)


Aliases : 4237.3

Description : ABC-2 type transporter; ABC transporter-like [Interproscan].


Gene families : OG_01_0000021 (OrthoFinder) Phylogenetic Tree(s): OG0000021_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold4237.3
Cluster HCCA: Cluster_26

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000605.3 tig00000605_g2469.t1 ABC transporter G family member 9 OS=Arabidopsis thaliana 0.02 OrthoFinder
Cre04.g220850 30791308 ABC transporter G family member 11 OS=Arabidopsis thaliana 0.01 OrthoFinder
Cre17.g743547 30782472 ABC transporter G family member 21 OS=Arabidopsis thaliana 0.01 OrthoFinder
Cz01g44030.t1 No alias ABC-2 type transporter; ABC transporter-like [Interproscan]. 0.01 OrthoFinder
Cz03g22070.t1 No alias ABC-2 type transporter; ABC transporter-like [Interproscan]. 0.01 OrthoFinder
Cz09g11220.t1 No alias ABC-2 type transporter; ABC transporter-like [Interproscan]. 0.01 OrthoFinder
Cz12g02110.t1 No alias ABC-2 type transporter; ABC transporter-like [Interproscan]. 0.01 OrthoFinder
PTI_02G01550.1 No alias ABC transporter-like; ABC-2 type transporter [Interproscan]. 0.02 OrthoFinder
PTI_02G01560.1 No alias ABC transporter-like; ABC-2 type transporter [Interproscan]. 0.02 OrthoFinder
PTI_24G00260.1 No alias ABC transporter-like; ABC-2 type transporter [Interproscan]. 0.05 OrthoFinder
Sro2145_g316370.1 Contig2950.g23391 Putative white-brown complex homolog protein 30 0.01 OrthoFinder
TP19G02540.1 No alias Fungal lipase-like domain; ABC transporter-like; ABC-2... 0.02 OrthoFinder
Transcript_contig_54121 54121 ABC-2 type transporter; ABC transporter-like [Interproscan]. 0.01 OrthoFinder
Transcript_contig_55351 55351 ABC-2 type transporter; ABC transporter-like [Interproscan]. 0.01 OrthoFinder
XM_003063563.1 MicpuC2_36543, 36543 ATP-binding cassette superfamily 0.02 OrthoFinder
lcl|BLLF01001823.1_cds_GFH21407.1_15884 HaLaN_18711, GFH21407 ABC transporter domain-containing protein 0.02 OrthoFinder
lcl|BLLF01001823.1_cds_GFH21408.1_15885 HaLaN_18712, GFH21408 ABC transporter domain-containing protein 0.02 OrthoFinder
lcl|BLLF01003649.1_cds_GFH27857.1_22334 HaLaN_26241, GFH27857 ABC transporter domain-containing protein 0.02 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8498383.1_7336 KAA8498383 ABC transporter G family member 14 0.02 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8498384.1_7337 KAA8498384 ABC transporter G family member 22 0.02 OrthoFinder
lcl|VRMN01000007.1_cds_KAA8493197.1_9498 KAA8493197 ABC transporter G family member 15 0.02 OrthoFinder
lcl|VRMN01000007.1_cds_KAA8493198.1_9499 KAA8493198 ABC transporter G family member 12 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0016020 membrane IEA Interproscan
MF GO:0016887 ATPase IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEP Enrichment
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Enrichment
BP GO:0006515 protein quality control for misfolded or incompletely synthesized proteins IEP Enrichment
BP GO:0010498 proteasomal protein catabolic process IEP Enrichment
BP GO:0019941 modification-dependent protein catabolic process IEP Enrichment
BP GO:0030163 protein catabolic process IEP Enrichment
BP GO:0031144 proteasome localization IEP Enrichment
BP GO:0031503 protein-containing complex localization IEP Enrichment
BP GO:0034613 cellular protein localization IEP Enrichment
BP GO:0034629 cellular protein-containing complex localization IEP Enrichment
BP GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Enrichment
BP GO:0044265 cellular macromolecule catabolic process IEP Enrichment
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Enrichment
BP GO:0051641 cellular localization IEP Enrichment
BP GO:0070727 cellular macromolecule localization IEP Enrichment
BP GO:0071630 nuclear protein quality control by the ubiquitin-proteasome system IEP Enrichment
BP GO:1901565 organonitrogen compound catabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR013525 ABC_2_trans 325 536
IPR003439 ABC_transporter-like_ATP-bd 38 193
No external refs found!