SymbC1.scaffold4188.5 (4188.5)

Aliases : 4188.5

Description : Integrase, catalytic core [Interproscan].

Gene families : OG_01_0001032 (OrthoFinder) Phylogenetic Tree(s): OG0001032_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: SymbC1.scaffold4188.5
Cluster	HCCA: Cluster_185

Target	Alias	Description	ECC score	Gene Family Method
SymbC1.scaffold2074.7	2074.7	Hypothetical protein	0.05	OrthoFinder
SymbC1.scaffold2226.8	2226.8	Hypothetical protein	0.04	OrthoFinder
SymbC1.scaffold2912.3	2912.3	Integrase, catalytic core [Interproscan].	0.03	OrthoFinder
SymbC1.scaffold3552.1	3552.1	Zinc finger, CCHC-type [Interproscan].	0.03	OrthoFinder
SymbC1.scaffold6121.2	6121.2	Hypothetical protein	0.05	OrthoFinder
SymbC1.scaffold6399.2	6399.2	Reverse transcriptase, RNA-dependent DNA polymerase...	0.02	OrthoFinder
SymbC1.scaffold6483.2	6483.2	Hypothetical protein	0.08	OrthoFinder

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015074	DNA integration	IEA	Interproscan
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0003725	double-stranded RNA binding	IEP	Enrichment
MF	GO:0004127	cytidylate kinase activity	IEP	Enrichment
BP	GO:0006541	glutamine metabolic process	IEP	Enrichment
BP	GO:0006542	glutamine biosynthetic process	IEP	Enrichment
MF	GO:0008270	zinc ion binding	IEP	Enrichment
MF	GO:0015002	obsolete heme-copper terminal oxidase activity	IEP	Enrichment
MF	GO:0016776	phosphotransferase activity, phosphate group as acceptor	IEP	Enrichment
MF	GO:0019205	nucleobase-containing compound kinase activity	IEP	Enrichment
CC	GO:0045261	proton-transporting ATP synthase complex, catalytic core F(1)	IEP	Enrichment
MF	GO:0046914	transition metal ion binding	IEP	Enrichment
MF	GO:0050145	nucleoside monophosphate kinase activity	IEP	Enrichment
MF	GO:0070402	NADPH binding	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR001584	Integrase_cat-core	257	355

External Links

No external refs found!