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  5. SymbC1.scaffold4113.3

SymbC1.scaffold4113.3 (4113.3)


Aliases : 4113.3

Description : RNA recognition motif domain; Forkhead-associated (FHA) domain; K Homology domain, type 1 [Interproscan].


Gene families : OG_01_0000189 (OrthoFinder) Phylogenetic Tree(s): OG0000189_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold4113.3
Cluster HCCA: Cluster_145

Target Alias Description ECC score Gene Family Method Actions
Dusal.0481s00010.1 33201483 K Homology domain, type 1; WW domain [Interproscan]. 0.01 OrthoFinder
Transcript_contig_54021 54021 K Homology domain, type 1; WW domain [Interproscan]. 0.01 OrthoFinder
XM_002500648.1 MICPUN_99702, 99702 K Homology domain, type 1 [Interproscan]. 0.02 OrthoFinder
lcl|BLLF01002302.1_cds_GFH23567.1_18044 HaLaN_21195, GFH23567 WW domain-containing protein 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000139 Golgi membrane IEP Enrichment
MF GO:0005338 nucleotide-sugar transmembrane transporter activity IEP Enrichment
MF GO:0008146 sulfotransferase activity IEP Enrichment
MF GO:0015165 pyrimidine nucleotide-sugar transmembrane transporter activity IEP Enrichment
BP GO:0015780 nucleotide-sugar transmembrane transport IEP Enrichment
BP GO:0015931 nucleobase-containing compound transport IEP Enrichment
MF GO:0015932 nucleobase-containing compound transmembrane transporter activity IEP Enrichment
CC GO:0031090 organelle membrane IEP Enrichment
BP GO:0090481 pyrimidine nucleotide-sugar transmembrane transport IEP Enrichment
CC GO:0098588 bounding membrane of organelle IEP Enrichment
BP GO:1901264 carbohydrate derivative transport IEP Enrichment
MF GO:1901505 carbohydrate derivative transmembrane transporter activity IEP Enrichment
InterPro domains Description Start Stop
IPR004088 KH_dom_type_1 1252 1312
IPR004088 KH_dom_type_1 1076 1140
IPR004088 KH_dom_type_1 1158 1222
IPR000253 FHA_dom 766 842
IPR000504 RRM_dom 1382 1444
No external refs found!