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  5. SymbC1.scaffold4098.6

SymbC1.scaffold4098.6 (4098.6)


Aliases : 4098.6

Description : Zinc finger, CCHC-type [Interproscan].


Gene families : OG_01_0000058 (OrthoFinder) Phylogenetic Tree(s): OG0000058_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold4098.6
Cluster HCCA: Cluster_501

Target Alias Description ECC score Gene Family Method Actions
SymbC1.scaffold10380.1 10380.1 Integrase, catalytic core [Interproscan]. 0.04 OrthoFinder
SymbC1.scaffold13830.1 13830.1 Hypothetical protein 0.04 OrthoFinder
SymbC1.scaffold1555.1 1555.1 Zinc finger, CCHC-type [Interproscan]. 0.05 OrthoFinder
SymbC1.scaffold166.9 166.9 Zinc finger, CCHC-type [Interproscan]. 0.04 OrthoFinder
SymbC1.scaffold1947.9 1947.9 Hypothetical protein 0.04 OrthoFinder
SymbC1.scaffold2374.4 2374.4 Hypothetical protein 0.04 OrthoFinder
SymbC1.scaffold277.5 277.5 Zinc finger, CCHC-type [Interproscan]. 0.03 OrthoFinder
SymbC1.scaffold280.3 280.3 Reverse transcriptase, RNA-dependent DNA polymerase... 0.04 OrthoFinder
SymbC1.scaffold329.2 329.2 Reverse transcriptase, RNA-dependent DNA polymerase... 0.07 OrthoFinder
SymbC1.scaffold3309.1 3309.1 Reverse transcriptase, RNA-dependent DNA polymerase... 0.02 OrthoFinder
SymbC1.scaffold3612.1 3612.1 Zinc finger, CCHC-type [Interproscan]. 0.05 OrthoFinder
SymbC1.scaffold3641.3 3641.3 Hypothetical protein 0.04 OrthoFinder
SymbC1.scaffold372.4 372.4 Hypothetical protein 0.03 OrthoFinder
SymbC1.scaffold4165.2 4165.2 Zinc finger, CCHC-type [Interproscan]. 0.04 OrthoFinder
SymbC1.scaffold5249.3 5249.3 Zinc finger, CCHC-type [Interproscan]. 0.04 OrthoFinder
SymbC1.scaffold550.3 550.3 Zinc finger, CCHC-type [Interproscan]. 0.03 OrthoFinder
SymbC1.scaffold6253.2 6253.2 Zinc finger, CCHC-type [Interproscan]. 0.05 OrthoFinder
SymbC1.scaffold692.1 692.1 Hypothetical protein 0.03 OrthoFinder
SymbC1.scaffold7159.4 7159.4 C-5 cytosine methyltransferase; Zinc finger, CCHC-type... 0.02 OrthoFinder
SymbC1.scaffold720.6 720.6 Zinc finger, CCHC-type [Interproscan]. 0.04 OrthoFinder
SymbC1.scaffold7247.3 7247.3 Zinc finger, CCHC-type [Interproscan]. 0.04 OrthoFinder
SymbC1.scaffold8751.1 8751.1 Hypothetical protein 0.06 OrthoFinder
SymbC1.scaffold8765.4 8765.4 Hypothetical protein 0.05 OrthoFinder
SymbC1.scaffold9481.1 9481.1 Hypothetical protein 0.04 OrthoFinder
SymbC1.scaffold9803.2 9803.2 Zinc finger, CCHC-type [Interproscan]. 0.06 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000723 telomere maintenance IEP Enrichment
MF GO:0005261 cation channel activity IEP Enrichment
MF GO:0005283 amino acid:sodium symporter activity IEP Enrichment
MF GO:0005342 organic acid transmembrane transporter activity IEP Enrichment
MF GO:0005343 organic acid:sodium symporter activity IEP Enrichment
MF GO:0005416 amino acid:cation symporter activity IEP Enrichment
BP GO:0006270 DNA replication initiation IEP Enrichment
BP GO:0006275 regulation of DNA replication IEP Enrichment
BP GO:0006814 sodium ion transport IEP Enrichment
BP GO:0006865 amino acid transport IEP Enrichment
MF GO:0008080 N-acetyltransferase activity IEP Enrichment
MF GO:0008514 organic anion transmembrane transporter activity IEP Enrichment
CC GO:0009427 bacterial-type flagellum basal body, distal rod, L ring IEP Enrichment
CC GO:0009428 bacterial-type flagellum basal body, distal rod, P ring IEP Enrichment
MF GO:0015081 sodium ion transmembrane transporter activity IEP Enrichment
MF GO:0015171 amino acid transmembrane transporter activity IEP Enrichment
MF GO:0015175 neutral amino acid transmembrane transporter activity IEP Enrichment
MF GO:0015252 proton channel activity IEP Enrichment
MF GO:0015294 solute:cation symporter activity IEP Enrichment
MF GO:0015370 solute:sodium symporter activity IEP Enrichment
MF GO:0015655 alanine:sodium symporter activity IEP Enrichment
BP GO:0015711 organic anion transport IEP Enrichment
BP GO:0015804 neutral amino acid transport IEP Enrichment
BP GO:0015849 organic acid transport IEP Enrichment
MF GO:0016407 acetyltransferase activity IEP Enrichment
MF GO:0016410 N-acyltransferase activity IEP Enrichment
MF GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
MF GO:0022858 alanine transmembrane transporter activity IEP Enrichment
CC GO:0030288 outer membrane-bounded periplasmic space IEP Enrichment
BP GO:0032200 telomere organization IEP Enrichment
BP GO:0032328 alanine transport IEP Enrichment
CC GO:0033178 proton-transporting two-sector ATPase complex, catalytic domain IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
CC GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1) IEP Enrichment
CC GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) IEP Enrichment
BP GO:0046417 chorismate metabolic process IEP Enrichment
MF GO:0046933 proton-transporting ATP synthase activity, rotational mechanism IEP Enrichment
BP GO:0046942 carboxylic acid transport IEP Enrichment
MF GO:0046943 carboxylic acid transmembrane transporter activity IEP Enrichment
BP GO:0060249 anatomical structure homeostasis IEP Enrichment
BP GO:0065007 biological regulation IEP Enrichment
InterPro domains Description Start Stop
IPR001878 Znf_CCHC 186 201
No external refs found!