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  5. SymbC1.scaffold40353.1

SymbC1.scaffold40353.1 (40353.1)


Aliases : 40353.1

Description : Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal [Interproscan].


Gene families : OG_01_0000164 (OrthoFinder) Phylogenetic Tree(s): OG0000164_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold40353.1
Cluster HCCA: Cluster_118

Target Alias Description ECC score Gene Family Method Actions
PTI_22G00880.1 No alias Cobalamin (vitamin B12) biosynthesis CobW-like,... 0.02 OrthoFinder
XM_002506987.1 MICPUN_78253, 78253 CobW/HypB/UreG, nucleotide-binding domain; Cobalamin... 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000139 Golgi membrane IEP Enrichment
MF GO:0004721 phosphoprotein phosphatase activity IEP Enrichment
MF GO:0005338 nucleotide-sugar transmembrane transporter activity IEP Enrichment
CC GO:0005783 endoplasmic reticulum IEP Enrichment
CC GO:0005788 endoplasmic reticulum lumen IEP Enrichment
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP Enrichment
MF GO:0015165 pyrimidine nucleotide-sugar transmembrane transporter activity IEP Enrichment
BP GO:0015780 nucleotide-sugar transmembrane transport IEP Enrichment
BP GO:0015931 nucleobase-containing compound transport IEP Enrichment
MF GO:0015932 nucleobase-containing compound transmembrane transporter activity IEP Enrichment
CC GO:0031090 organelle membrane IEP Enrichment
CC GO:0031974 membrane-enclosed lumen IEP Enrichment
CC GO:0043233 organelle lumen IEP Enrichment
MF GO:0051082 unfolded protein binding IEP Enrichment
CC GO:0070013 intracellular organelle lumen IEP Enrichment
BP GO:0071702 organic substance transport IEP Enrichment
BP GO:0071705 nitrogen compound transport IEP Enrichment
BP GO:0090481 pyrimidine nucleotide-sugar transmembrane transport IEP Enrichment
CC GO:0098588 bounding membrane of organelle IEP Enrichment
BP GO:1901264 carbohydrate derivative transport IEP Enrichment
MF GO:1901505 carbohydrate derivative transmembrane transporter activity IEP Enrichment
InterPro domains Description Start Stop
IPR011629 Cbl_biosynth_CobW-like_C 21 130
No external refs found!