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  5. SymbC1.scaffold4.648

SymbC1.scaffold4.648 (4.648)


Aliases : 4.648

Description : NlpB/DapX lipoprotein; DapA-like; Metallo-beta-lactamase; Mce/MlaD; Intermembrane transport protein PqiA-like [Interproscan].


Gene families : OG_01_0001767 (OrthoFinder) Phylogenetic Tree(s): OG0001767_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold4.648

Target Alias Description ECC score Gene Family Method Actions
SymbC1.scaffold2.1725 2.1725 DapA-like [Interproscan]. 0.06 OrthoFinder
SymbC1.scaffold25.258 25.258 Solute-binding protein family 3/N-terminal domain of... 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0016829 lyase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEP Enrichment
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Enrichment
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
MF GO:0046914 transition metal ion binding IEP Enrichment
BP GO:0071586 CAAX-box protein processing IEP Enrichment
InterPro domains Description Start Stop
IPR001279 Metallo-B-lactamas 633 812
IPR010653 NlpB/DapX 309 632
IPR003399 Mce/MlaD 1512 1616
IPR003399 Mce/MlaD 1384 1457
IPR003399 Mce/MlaD 1266 1357
IPR002220 DapA-like 1 273
IPR007498 PqiA-like 909 1061
IPR007498 PqiA-like 1082 1216
No external refs found!