SymbC1.scaffold4.334 (4.334)


Aliases : 4.334

Description : PRC-barrel domain; Integrase, catalytic domain; Ribosomal protein S16; RimM, N-terminal; Ribosomal protein L19; Integrase, SAM-like, N-terminal; tRNA methyltransferase TRMD/TRM10-type domain [Interproscan].


Gene families : OG_01_0001014 (OrthoFinder) Phylogenetic Tree(s): OG0001014_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold4.334
Cluster HCCA: Cluster_120

Target Alias Description ECC score Gene Family Method Actions
Transcript_contig_86755 86755 Ribosomal protein L19 [Interproscan]. 0.01 OrthoFinder
lcl|BLLF01000249.1_cds_GFH09633.1_4110 HaLaN_04811, GFH09633 50S ribosomal protein L19, chloroplastic 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006310 DNA recombination IEA Interproscan
BP GO:0006364 rRNA processing IEA Interproscan
BP GO:0006412 translation IEA Interproscan
BP GO:0015074 DNA integration IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0008519 ammonium transmembrane transporter activity IEP Enrichment
BP GO:0015696 ammonium transport IEP Enrichment
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP Enrichment
MF GO:0016887 ATPase IEP Enrichment
CC GO:0043190 ATP-binding cassette (ABC) transporter complex IEP Enrichment
CC GO:0098533 ATPase dependent transmembrane transport complex IEP Enrichment
CC GO:0098797 plasma membrane protein complex IEP Enrichment
CC GO:1902495 transmembrane transporter complex IEP Enrichment
CC GO:1904949 ATPase complex IEP Enrichment
CC GO:1990351 transporter complex IEP Enrichment
InterPro domains Description Start Stop
IPR000307 Ribosomal_S16 8 68
IPR002104 Integrase_catalytic 795 965
IPR016009 tRNA_MeTrfase_TRMD/TRM10 307 508
IPR027275 PRC-brl_dom 224 293
IPR002676 RimM_N 127 216
IPR001857 Ribosomal_L19 534 635
IPR004107 Integrase_SAM-like_N 690 771
No external refs found!