SymbC1.scaffold4.212 (4.212)

Aliases : 4.212

Description : UvrD/AddA helicase, N-terminal; PD-(D/E)XK endonuclease-like domain, AddAB-type; UvrD-like DNA helicase, C-terminal; PilZ domain [Interproscan].

Gene families : OG_01_0001464 (OrthoFinder) Phylogenetic Tree(s): OG0001464_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: SymbC1.scaffold4.212
Cluster	HCCA: Cluster_24

Target	Alias	Description	ECC score	Gene Family Method	Actions
SymbC1.scaffold19406.2	19406.2	Cobalamin (vitamin B12)-binding module, cap domain;...	0.02	OrthoFinder
Transcript_contig_78217	78217	Pterin-binding domain; Homocysteine-binding domain...	0.01	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0016787	hydrolase activity	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0019001	guanyl nucleotide binding	None	Extended
MF	GO:0030551	cyclic nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0032561	guanyl ribonucleotide binding	None	Extended
MF	GO:0035438	cyclic-di-GMP binding	IEA	Interproscan
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004019	adenylosuccinate synthase activity	IEP	Enrichment
MF	GO:0004175	endopeptidase activity	IEP	Enrichment
CC	GO:0019867	outer membrane	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR014017	DNA_helicase_UvrD-like_C	1989	2080
IPR009875	PilZ_domain	165	253
IPR014017	DNA_helicase_UvrD-like_C	1723	1877
IPR038726	PDDEXK_AddAB-type	1015	1268
IPR038726	PDDEXK_AddAB-type	2187	2352

External Links

No external refs found!

SymbC1.scaffold4.212 (4.212)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation