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  5. SymbC1.scaffold4.1571

SymbC1.scaffold4.1571 (4.1571)


Aliases : 4.1571

Description : Domain of unknown function DUF1989; Carboxyltransferase domain, subdomain A and B; Biotin/lipoyl attachment; Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain; Biotin carboxylase-like, N-terminal domain; ABC transporter-like; ABC transporter type 1, transmembrane domain MetI-like; Metallo-beta-lactamase; Putative HupE/UreJ protein; Biotin carboxylase, C-terminal; Carboxyltransferase domain, subdomain C and D [Interproscan].


Gene families : OG_01_0000176 (OrthoFinder) Phylogenetic Tree(s): OG0000176_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold4.1571
Cluster HCCA: Cluster_191

Target Alias Description ECC score Gene Family Method Actions
SymbC1.scaffold113.25 113.25 Carboxylase, conserved domain; Biotin/lipoyl attachment;... 0.02 OrthoFinder
SymbC1.scaffold2.1783 2.1783 Carbamoyl-phosphate synthetase large subunit-like,... 0.02 OrthoFinder
SymbC1.scaffold20482.1 20482.1 Carbamoyl-phosphate synthetase large subunit-like,... 0.07 OrthoFinder
SymbC1.scaffold4.1639 4.1639 RNA polymerase sigma factor 54 interaction domain;... 0.03 OrthoFinder
SymbC1.scaffold4.687 4.687 Biotin/lipoyl attachment; Acetyl-CoA carboxylase;... 0.04 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0016020 membrane IEA Interproscan
MF GO:0016887 ATPase IEA Interproscan
BP GO:0055085 transmembrane transport IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006541 glutamine metabolic process IEP Enrichment
BP GO:0006542 glutamine biosynthetic process IEP Enrichment
MF GO:0008270 zinc ion binding IEP Enrichment
BP GO:0008360 regulation of cell shape IEP Enrichment
MF GO:0008484 sulfuric ester hydrolase activity IEP Enrichment
CC GO:0009427 bacterial-type flagellum basal body, distal rod, L ring IEP Enrichment
CC GO:0009428 bacterial-type flagellum basal body, distal rod, P ring IEP Enrichment
MF GO:0009678 pyrophosphate hydrolysis-driven proton transmembrane transporter activity IEP Enrichment
MF GO:0015002 obsolete heme-copper terminal oxidase activity IEP Enrichment
MF GO:0016987 sigma factor activity IEP Enrichment
BP GO:0022603 regulation of anatomical structure morphogenesis IEP Enrichment
BP GO:0022604 regulation of cell morphogenesis IEP Enrichment
CC GO:0030288 outer membrane-bounded periplasmic space IEP Enrichment
BP GO:0050793 regulation of developmental process IEP Enrichment
InterPro domains Description Start Stop
IPR003439 ABC_transporter-like_ATP-bd 614 764
IPR000515 MetI-like 439 598
IPR032809 Put_HupE_UreJ 2576 2725
IPR018959 DUF1989 845 1016
IPR018959 DUF1989 1060 1227
IPR005482 Biotin_COase_C 1578 1682
IPR005479 CbamoylP_synth_lsu-like_ATP-bd 1360 1563
IPR003833 CT_C_D 2031 2249
IPR000089 Biotin_lipoyl 2363 2423
IPR005481 BC-like_N 1245 1351
IPR003778 CT_A_B 1717 1989
IPR001279 Metallo-B-lactamas 2839 2997
No external refs found!