SymbC1.scaffold4.1200 (4.1200)

Aliases : 4.1200

Description : Ribosomal protein L22/L17; Ribosomal protein L4/L1e; Ribosomal protein L10e/L16; Ribosomal Proteins L2, RNA binding domain; K Homology domain, type 2; Ribosomal protein S3, C-terminal; Translation elongation factor EFTu/EF1A, C-terminal; Transcription factor, GTP-binding domain; Ribosomal protein L3; Ribosomal protein S19/S15; Ribosomal protein L2, C-terminal; Ribosomal protein L25/L23; Translation elongation factor EFTu-like, domain 2; Ribosomal protein S10 domain [Interproscan].

Gene families : OG_01_0001139 (OrthoFinder) Phylogenetic Tree(s): OG0001139_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type Description Actions
Neighborhood HRR: SymbC1.scaffold4.1200
Cluster HCCA: Cluster_83

Target Alias Description ECC score Gene Family Method Actions
SymbC1.scaffold940.57 940.57 Elongation factor EFG, domain V-like; Translation... 0.03 OrthoFinder
Transcript_contig_62566 62566 Translation elongation factor EFTu/EF1A, C-terminal;... 0.01 OrthoFinder
lcl|BLLF01000489.1_cds_GFH12301.1_6778 HaLaN_07958, GFH12301 Elongation factor Tu 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0003735 structural constituent of ribosome IEA Interproscan
MF GO:0003924 GTPase activity IEA Interproscan
MF GO:0005525 GTP binding IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0004386 helicase activity IEP Enrichment
BP GO:0006066 alcohol metabolic process IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006810 transport IEP Enrichment
BP GO:0006812 cation transport IEP Enrichment
BP GO:0006935 chemotaxis IEP Enrichment
MF GO:0008519 ammonium transmembrane transporter activity IEP Enrichment
BP GO:0015696 ammonium transport IEP Enrichment
CC GO:0016020 membrane IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
BP GO:0016311 dephosphorylation IEP Enrichment
MF GO:0016887 ATPase IEP Enrichment
BP GO:0019751 polyol metabolic process IEP Enrichment
BP GO:0030001 metal ion transport IEP Enrichment
BP GO:0031554 regulation of DNA-templated transcription, termination IEP Enrichment
BP GO:0040011 locomotion IEP Enrichment
BP GO:0042330 taxis IEP Enrichment
BP GO:0043244 regulation of protein-containing complex disassembly IEP Enrichment
BP GO:0043647 inositol phosphate metabolic process IEP Enrichment
BP GO:0044262 cellular carbohydrate metabolic process IEP Enrichment
BP GO:0044282 small molecule catabolic process IEP Enrichment
BP GO:0046164 alcohol catabolic process IEP Enrichment
BP GO:0046174 polyol catabolic process IEP Enrichment
BP GO:0046434 organophosphate catabolic process IEP Enrichment
BP GO:0046838 phosphorylated carbohydrate dephosphorylation IEP Enrichment
BP GO:0046855 inositol phosphate dephosphorylation IEP Enrichment
BP GO:0051128 regulation of cellular component organization IEP Enrichment
BP GO:0051179 localization IEP Enrichment
BP GO:0051234 establishment of localization IEP Enrichment
BP GO:0071545 inositol phosphate catabolic process IEP Enrichment
BP GO:1901615 organic hydroxy compound metabolic process IEP Enrichment
BP GO:1901616 organic hydroxy compound catabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR022669 Ribosomal_L2_C 1071 1190
IPR002136 Ribosomal_L4/L1e 702 888
IPR022666 Rbsml_prot_L2_RNA-bd_dom 987 1062
IPR027486 Ribosomal_S10_dom 417 491
IPR004160 Transl_elong_EFTu/EF1A_C 300 385
IPR013025 Ribosomal_L25/23 887 959
IPR000795 T_Tr_GTP-bd_dom 10 203
IPR000597 Ribosomal_L3 587 670
IPR001063 Ribosomal_L22 1281 1373
IPR004161 EFTu-like_2 227 295
IPR004044 KH_dom_type_2 1396 1469
IPR016180 Ribosomal_L10e/L16 1575 1690
IPR001351 Ribosomal_S3_C 1478 1560
IPR002222 Ribosomal_S19 1196 1276
No external refs found!