SymbC1.scaffold4.1200 (4.1200)

Aliases : 4.1200

Description : Ribosomal protein L22/L17; Ribosomal protein L4/L1e; Ribosomal protein L10e/L16; Ribosomal Proteins L2, RNA binding domain; K Homology domain, type 2; Ribosomal protein S3, C-terminal; Translation elongation factor EFTu/EF1A, C-terminal; Transcription factor, GTP-binding domain; Ribosomal protein L3; Ribosomal protein S19/S15; Ribosomal protein L2, C-terminal; Ribosomal protein L25/L23; Translation elongation factor EFTu-like, domain 2; Ribosomal protein S10 domain [Interproscan].

Gene families : OG_01_0001139 (OrthoFinder) Phylogenetic Tree(s): OG0001139_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: SymbC1.scaffold4.1200
Cluster	HCCA: Cluster_83

Target	Alias	Description	ECC score	Gene Family Method
SymbC1.scaffold940.57	940.57	Elongation factor EFG, domain V-like; Translation...	0.03	OrthoFinder
Transcript_contig_62566	62566	Translation elongation factor EFTu/EF1A, C-terminal;...	0.01	OrthoFinder
lcl\|BLLF01000489.1_cds_GFH12301.1_6778	HaLaN_07958, GFH12301	Elongation factor Tu	0.01	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003924	GTPase activity	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005525	GTP binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	nucleoside-triphosphatase activity	None	Extended
MF	GO:0019001	guanyl nucleotide binding	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032561	guanyl ribonucleotide binding	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004386	helicase activity	IEP	Enrichment
BP	GO:0006066	alcohol metabolic process	IEP	Enrichment
BP	GO:0006364	rRNA processing	IEP	Enrichment
BP	GO:0006810	transport	IEP	Enrichment
BP	GO:0006812	cation transport	IEP	Enrichment
BP	GO:0006935	chemotaxis	IEP	Enrichment
MF	GO:0008519	ammonium transmembrane transporter activity	IEP	Enrichment
BP	GO:0015696	ammonium transport	IEP	Enrichment
CC	GO:0016020	membrane	IEP	Enrichment
BP	GO:0016072	rRNA metabolic process	IEP	Enrichment
BP	GO:0016311	dephosphorylation	IEP	Enrichment
MF	GO:0016887	ATPase	IEP	Enrichment
BP	GO:0019751	polyol metabolic process	IEP	Enrichment
BP	GO:0030001	metal ion transport	IEP	Enrichment
BP	GO:0031554	regulation of DNA-templated transcription, termination	IEP	Enrichment
BP	GO:0040011	locomotion	IEP	Enrichment
BP	GO:0042330	taxis	IEP	Enrichment
BP	GO:0043244	regulation of protein-containing complex disassembly	IEP	Enrichment
BP	GO:0043647	inositol phosphate metabolic process	IEP	Enrichment
BP	GO:0044262	cellular carbohydrate metabolic process	IEP	Enrichment
BP	GO:0044282	small molecule catabolic process	IEP	Enrichment
BP	GO:0046164	alcohol catabolic process	IEP	Enrichment
BP	GO:0046174	polyol catabolic process	IEP	Enrichment
BP	GO:0046434	organophosphate catabolic process	IEP	Enrichment
BP	GO:0046838	phosphorylated carbohydrate dephosphorylation	IEP	Enrichment
BP	GO:0046855	inositol phosphate dephosphorylation	IEP	Enrichment
BP	GO:0051128	regulation of cellular component organization	IEP	Enrichment
BP	GO:0051179	localization	IEP	Enrichment
BP	GO:0051234	establishment of localization	IEP	Enrichment
BP	GO:0071545	inositol phosphate catabolic process	IEP	Enrichment
BP	GO:1901615	organic hydroxy compound metabolic process	IEP	Enrichment
BP	GO:1901616	organic hydroxy compound catabolic process	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR022669	Ribosomal_L2_C	1071	1190
IPR002136	Ribosomal_L4/L1e	702	888
IPR022666	Rbsml_prot_L2_RNA-bd_dom	987	1062
IPR027486	Ribosomal_S10_dom	417	491
IPR004160	Transl_elong_EFTu/EF1A_C	300	385
IPR013025	Ribosomal_L25/23	887	959
IPR000795	T_Tr_GTP-bd_dom	10	203
IPR000597	Ribosomal_L3	587	670
IPR001063	Ribosomal_L22	1281	1373
IPR004161	EFTu-like_2	227	295
IPR004044	KH_dom_type_2	1396	1469
IPR016180	Ribosomal_L10e/L16	1575	1690
IPR001351	Ribosomal_S3_C	1478	1560
IPR002222	Ribosomal_S19	1196	1276

External Links

No external refs found!

SymbC1.scaffold4.1200 (4.1200)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation