SymbC1.scaffold4.1132 (4.1132)


Aliases : 4.1132

Description : GTPase HflX, N-terminal; RNA-binding protein Hfq; ATP-dependent (S)-NAD(P)H-hydrate dehydratase; MutL, C-terminal, dimerisation; N-acetylmuramoyl-L-alanine amidase, catalytic domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; DNA mismatch repair protein, S5 domain 2-like; GTP-binding protein, middle domain; GTP binding domain; IPP transferase; AMIN domain; tRNA threonylcarbamoyl adenosine modification protein TsaE; LysM domain; YjeF N-terminal domain [Interproscan].


Gene families : OG_01_0000962 (OrthoFinder) Phylogenetic Tree(s): OG0000962_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold4.1132
Cluster HCCA: Cluster_62


Type GO Term Name Evidence Source
BP GO:0002949 tRNA threonylcarbamoyladenosine modification IEA Interproscan
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0005525 GTP binding IEA Interproscan
BP GO:0006298 mismatch repair IEA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
BP GO:0008033 tRNA processing IEA Interproscan
MF GO:0008745 N-acetylmuramoyl-L-alanine amidase activity IEA Interproscan
BP GO:0009253 peptidoglycan catabolic process IEA Interproscan
MF GO:0030983 mismatched DNA binding IEA Interproscan
MF GO:0052855 ADP-dependent NAD(P)H-hydrate dehydratase activity IEA Interproscan
Type GO Term Name Evidence Source
BP GO:0000272 polysaccharide catabolic process IEP Enrichment
MF GO:0005342 organic acid transmembrane transporter activity IEP Enrichment
CC GO:0005887 integral component of plasma membrane IEP Enrichment
BP GO:0005976 polysaccharide metabolic process IEP Enrichment
BP GO:0006820 anion transport IEP Enrichment
MF GO:0008028 monocarboxylic acid transmembrane transporter activity IEP Enrichment
MF GO:0008509 anion transmembrane transporter activity IEP Enrichment
MF GO:0008514 organic anion transmembrane transporter activity IEP Enrichment
MF GO:0015129 lactate transmembrane transporter activity IEP Enrichment
BP GO:0015711 organic anion transport IEP Enrichment
BP GO:0015718 monocarboxylic acid transport IEP Enrichment
BP GO:0015727 lactate transport IEP Enrichment
BP GO:0015849 organic acid transport IEP Enrichment
BP GO:0015850 organic hydroxy compound transport IEP Enrichment
CC GO:0031226 intrinsic component of plasma membrane IEP Enrichment
BP GO:0046942 carboxylic acid transport IEP Enrichment
MF GO:0046943 carboxylic acid transmembrane transporter activity IEP Enrichment
MF GO:1901618 organic hydroxy compound transmembrane transporter activity IEP Enrichment
InterPro domains Description Start Stop
IPR025121 GTPase_HflX_N 2021 2108
IPR021731 AMIN_dom 639 739
IPR018392 LysM_dom 1005 1034
IPR018022 IPT 1638 1886
IPR006073 GTP-bd 2196 2314
IPR013507 DNA_mismatch_S5_2-like 1246 1361
IPR014790 MutL_C 1437 1583
IPR002508 MurNAc-LAA_cat 762 981
IPR004443 YjeF_N_dom 29 188
IPR005001 Hfq 1900 1951
IPR003442 T6A_TsaE 492 600
IPR000631 CARKD 250 491
IPR032305 GTP-bd_M 2110 2188
No external refs found!