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  5. SymbC1.scaffold4.1002

SymbC1.scaffold4.1002 (4.1002)


Aliases : 4.1002

Description : Domain of unknown function DUF4976; Methyltransferase domain 25; ABC transporter-like; Domain of unknown function DUF2236; Sulfatase, N-terminal; Oligopeptide/dipeptide ABC transporter, C-terminal; Solute-binding protein family 5 domain [Interproscan].


Gene families : OG_01_0000747 (OrthoFinder) Phylogenetic Tree(s): OG0000747_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold4.1002

Target Alias Description ECC score Gene Family Method Actions
SymbC1.scaffold160.15 160.15 ABC transporter-like; ABC transporter type 1,... 0.07 OrthoFinder
SymbC1.scaffold217.42 217.42 ABC transporter type 1, transmembrane domain MetI-like;... 0.03 OrthoFinder
SymbC1.scaffold217.54 217.54 Phytanoyl-CoA dioxygenase; ABC transporter-like; ABC... 0.01 OrthoFinder
SymbC1.scaffold25.1 25.1 Phytanoyl-CoA dioxygenase; ABC transporter-like; ABC... 0.07 OrthoFinder
SymbC1.scaffold25.194 25.194 Transcription regulator HTH, GntR; ABC transporter-like;... 0.01 OrthoFinder
SymbC1.scaffold4.1003 4.1003 ABC transporter type 1, transmembrane domain MetI-like... 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0008484 sulfuric ester hydrolase activity IEA Interproscan
BP GO:0015833 peptide transport IEA Interproscan
MF GO:0016887 ATPase IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP Enrichment
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Enrichment
MF GO:0005198 structural molecule activity IEP Enrichment
CC GO:0005840 ribosome IEP Enrichment
BP GO:0006412 translation IEP Enrichment
BP GO:0006518 peptide metabolic process IEP Enrichment
MF GO:0016859 cis-trans isomerase activity IEP Enrichment
BP GO:0043043 peptide biosynthetic process IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043228 non-membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Enrichment
BP GO:0043603 cellular amide metabolic process IEP Enrichment
BP GO:0043604 amide biosynthetic process IEP Enrichment
MF GO:0051287 NAD binding IEP Enrichment
InterPro domains Description Start Stop
IPR032506 DUF4976 1659 1747
IPR003439 ABC_transporter-like_ATP-bd 1019 1169
IPR041698 Methyltransf_25 2511 2606
IPR000914 SBP_5_dom 178 560
IPR003439 ABC_transporter-like_ATP-bd 707 865
IPR018713 MPAB/Lcp_cat_dom 2236 2465
IPR013563 Oligopep_ABC_C 918 982
IPR013563 Oligopep_ABC_C 1221 1287
IPR000917 Sulfatase_N 1331 1657
No external refs found!