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  5. SymbC1.scaffold3949.1

SymbC1.scaffold3949.1 (3949.1)


Aliases : 3949.1

Description : Glycosyl transferase, family 1; Starch synthase, catalytic domain [Interproscan].


Gene families : OG_01_0000262 (OrthoFinder) Phylogenetic Tree(s): OG0000262_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold3949.1
Cluster HCCA: Cluster_18

Target Alias Description ECC score Gene Family Method Actions
Vocar.0025s0172.1 32898226 Starch synthase, catalytic domain [Interproscan]. 0.01 OrthoFinder
lcl|BLLF01000151.1_cds_GFH08295.1_2772 HaLaN_03235, GFH08295 Starch synthase, chloroplastic/amyloplastic 0.01 OrthoFinder
lcl|LHPG02000002.1_cds_PRW60501.1_4331 PRW60501 Granule-bound starch synthase chloroplastic amyloplastic 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004611 phosphoenolpyruvate carboxykinase activity IEP Enrichment
MF GO:0008964 phosphoenolpyruvate carboxylase activity IEP Enrichment
BP GO:0015977 carbon fixation IEP Enrichment
InterPro domains Description Start Stop
IPR013534 Starch_synth_cat_dom 238 494
IPR001296 Glyco_trans_1 550 667
No external refs found!