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  5. SymbC1.scaffold3931.2

SymbC1.scaffold3931.2 (3931.2)


Aliases : 3931.2

Description : DEAD/DEAH box helicase domain; Helicase, C-terminal [Interproscan].


Gene families : OG_01_0000042 (OrthoFinder) Phylogenetic Tree(s): OG0000042_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold3931.2
Cluster HCCA: Cluster_82

Target Alias Description ECC score Gene Family Method Actions
Cz14g08150.t1 No alias Helicase, C-terminal; Domain of unknown function... 0.02 OrthoFinder
Dusal.0003s00057.1 33187539 Helicase, C-terminal; Domain of unknown function... 0.01 OrthoFinder
Dusal.0244s00011.1 33186504 Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.02 OrthoFinder
EOD05883 No alias ATP-dependent RNA helicase [Ensembl]. 0.01 OrthoFinder
EOD26794 No alias Helicase, C-terminal; Domain of unknown function... 0.01 OrthoFinder
EOD28324 No alias Helicase, C-terminal; Domain of unknown function... 0.01 OrthoFinder
EOD31583 No alias Helicase, C-terminal; Domain of unknown function... 0.02 OrthoFinder
OT_04G02170.1 No alias S1 domain; AAA+ ATPase domain; Helicase, C-terminal;... 0.02 OrthoFinder
OT_11G02430.1 No alias Helicase-associated domain; Helicase, C-terminal; Domain... 0.02 OrthoFinder
Sro54_g031680.1 Contig2430.g19856 Splicing factor ATP-dependent RNA helicase 0.02 OrthoFinder
Transcript_contig_55707 55707 Helicase, C-terminal; S1 domain; DEAD/DEAH box helicase... 0.01 OrthoFinder
Transcript_contig_89480 89480 Helicase-associated domain; Helicase, C-terminal; Domain... 0.01 OrthoFinder
lcl|BLLF01001160.1_cds_GFH17514.1_11991 HaLaN_14169, GFH17514 Helicase-associated domain [Interproscan]. 0.03 OrthoFinder
lcl|BLLF01001168.1_cds_GFH17561.1_12038 HaLaN_14223, GFH17561 Helicase, C-terminal; Helicase-associated domain; Domain... 0.01 OrthoFinder
lcl|LHPG02000005.1_cds_PRW58375.1_7631 PRW58375 Putative pre-mRNA-splicing factor ATP-dependent RNA helicase 0.03 OrthoFinder
lcl|LHPG02000018.1_cds_PRW32898.1_3654 PRW32898 ATP-dependent RNA helicase isoform X1 0.02 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8496408.1_137 KAA8496408 Pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0005984 disaccharide metabolic process IEP Enrichment
BP GO:0005991 trehalose metabolic process IEP Enrichment
BP GO:0005992 trehalose biosynthetic process IEP Enrichment
BP GO:0009311 oligosaccharide metabolic process IEP Enrichment
BP GO:0009312 oligosaccharide biosynthetic process IEP Enrichment
BP GO:0034637 cellular carbohydrate biosynthetic process IEP Enrichment
BP GO:0046351 disaccharide biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR001650 Helicase_C 264 393
IPR011545 DEAD/DEAH_box_helicase_dom 61 218
No external refs found!