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  5. SymbC1.scaffold3924.2

SymbC1.scaffold3924.2 (3924.2)


Aliases : 3924.2

Description : Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal; CobW/HypB/UreG, nucleotide-binding domain [Interproscan].


Gene families : OG_01_0000111 (OrthoFinder) Phylogenetic Tree(s): OG0000111_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold3924.2
Cluster HCCA: Cluster_56

Target Alias Description ECC score Gene Family Method Actions
EOD09457 No alias CobW/HypB/UreG, nucleotide-binding domain [Interproscan]. 0.01 OrthoFinder
Sro1142_g245790.1 Contig2104.g17868 COBW domain-containing protein 0.01 OrthoFinder
SymbC1.scaffold1277.4 1277.4 CobW/HypB/UreG, nucleotide-binding domain [Interproscan]. 0.02 OrthoFinder
lcl|BLLF01000319.1_cds_GFH10484.1_4961 HaLaN_05805, GFH10484 CobW C-terminal domain-containing protein 0.01 OrthoFinder
lcl|LHPG02000004.1_cds_PRW59349.1_7459 PRW59349 Cobalamin biosynthesis 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP Enrichment
MF GO:0003855 3-dehydroquinate dehydratase activity IEP Enrichment
MF GO:0004363 glutathione synthase activity IEP Enrichment
MF GO:0004518 nuclease activity IEP Enrichment
MF GO:0004556 alpha-amylase activity IEP Enrichment
BP GO:0006575 cellular modified amino acid metabolic process IEP Enrichment
BP GO:0006749 glutathione metabolic process IEP Enrichment
BP GO:0006750 glutathione biosynthetic process IEP Enrichment
MF GO:0008408 3'-5' exonuclease activity IEP Enrichment
MF GO:0008963 phospho-N-acetylmuramoyl-pentapeptide-transferase activity IEP Enrichment
MF GO:0016160 amylase activity IEP Enrichment
MF GO:0016780 phosphotransferase activity, for other substituted phosphate groups IEP Enrichment
MF GO:0016881 acid-amino acid ligase activity IEP Enrichment
BP GO:0019184 nonribosomal peptide biosynthetic process IEP Enrichment
MF GO:0030246 carbohydrate binding IEP Enrichment
MF GO:0030247 polysaccharide binding IEP Enrichment
BP GO:0042398 cellular modified amino acid biosynthetic process IEP Enrichment
BP GO:0044272 sulfur compound biosynthetic process IEP Enrichment
MF GO:2001070 starch binding IEP Enrichment
InterPro domains Description Start Stop
IPR003495 CobW/HypB/UreG_dom 189 378
IPR011629 Cbl_biosynth_CobW-like_C 425 515
No external refs found!