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  5. SymbC1.scaffold39.172

SymbC1.scaffold39.172 (39.172)


Aliases : 39.172

Description : Elongation factor EFG, domain V-like; Aminotransferase, class I/classII; Transcription factor, GTP-binding domain; Translation elongation factor EFG/EF2, domain IV; Elongation Factor G, domain II [Interproscan].


Gene families : OG_01_0000692 (OrthoFinder) Phylogenetic Tree(s): OG0000692_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold39.172
Cluster HCCA: Cluster_70

Target Alias Description ECC score Gene Family Method Actions
Sro2152_g316750.1 Contig1736.g15481 Bifunctional aspartate aminotransferase and... 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEA Interproscan
MF GO:0005525 GTP binding IEA Interproscan
BP GO:0009058 biosynthetic process IEA Interproscan
MF GO:0030170 pyridoxal phosphate binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000272 polysaccharide catabolic process IEP Enrichment
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Enrichment
BP GO:0005976 polysaccharide metabolic process IEP Enrichment
BP GO:0006188 IMP biosynthetic process IEP Enrichment
BP GO:0006189 'de novo' IMP biosynthetic process IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
BP GO:0009123 nucleoside monophosphate metabolic process IEP Enrichment
BP GO:0009124 nucleoside monophosphate biosynthetic process IEP Enrichment
BP GO:0009126 purine nucleoside monophosphate metabolic process IEP Enrichment
BP GO:0009127 purine nucleoside monophosphate biosynthetic process IEP Enrichment
BP GO:0009152 purine ribonucleotide biosynthetic process IEP Enrichment
BP GO:0009156 ribonucleoside monophosphate biosynthetic process IEP Enrichment
BP GO:0009161 ribonucleoside monophosphate metabolic process IEP Enrichment
BP GO:0009167 purine ribonucleoside monophosphate metabolic process IEP Enrichment
BP GO:0009168 purine ribonucleoside monophosphate biosynthetic process IEP Enrichment
BP GO:0009260 ribonucleotide biosynthetic process IEP Enrichment
CC GO:0016020 membrane IEP Enrichment
MF GO:0016151 nickel cation binding IEP Enrichment
MF GO:0016491 oxidoreductase activity IEP Enrichment
BP GO:0019627 urea metabolic process IEP Enrichment
BP GO:0019748 secondary metabolic process IEP Enrichment
BP GO:0030638 polyketide metabolic process IEP Enrichment
MF GO:0034062 5'-3' RNA polymerase activity IEP Enrichment
BP GO:0043603 cellular amide metabolic process IEP Enrichment
BP GO:0046040 IMP metabolic process IEP Enrichment
BP GO:0046390 ribose phosphate biosynthetic process IEP Enrichment
MF GO:0052855 ADP-dependent NAD(P)H-hydrate dehydratase activity IEP Enrichment
BP GO:0055114 obsolete oxidation-reduction process IEP Enrichment
BP GO:0065003 protein-containing complex assembly IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
BP GO:0071941 nitrogen cycle metabolic process IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
MF GO:0097747 RNA polymerase activity IEP Enrichment
InterPro domains Description Start Stop
IPR000795 T_Tr_GTP-bd_dom 384 468
IPR004839 Aminotransferase_I/II 224 366
IPR004839 Aminotransferase_I/II 25 218
IPR005517 Transl_elong_EFG/EF2_IV 805 922
IPR041095 EFG_II 732 803
IPR000640 EFG_V-like 925 1014
No external refs found!