1. Home
  2. Species
  3. Cladocopium sp. clade C
  4. Sequence
  5. SymbC1.scaffold3876.2

SymbC1.scaffold3876.2 (3876.2)


Aliases : 3876.2

Description : Zinc finger, CCHC-type [Interproscan].


Gene families : OG_01_0000058 (OrthoFinder) Phylogenetic Tree(s): OG0000058_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold3876.2
Cluster HCCA: Cluster_55

Target Alias Description ECC score Gene Family Method Actions
SymbC1.scaffold10380.1 10380.1 Integrase, catalytic core [Interproscan]. 0.03 OrthoFinder
SymbC1.scaffold11335.1 11335.1 Hypothetical protein 0.03 OrthoFinder
SymbC1.scaffold1152.4 1152.4 Hypothetical protein 0.05 OrthoFinder
SymbC1.scaffold124.6 124.6 Integrase, catalytic core [Interproscan]. 0.02 OrthoFinder
SymbC1.scaffold12679.1 12679.1 Zinc finger, CCHC-type [Interproscan]. 0.03 OrthoFinder
SymbC1.scaffold12679.2 12679.2 Reverse transcriptase, RNA-dependent DNA polymerase... 0.08 OrthoFinder
SymbC1.scaffold13830.1 13830.1 Hypothetical protein 0.04 OrthoFinder
SymbC1.scaffold1555.1 1555.1 Zinc finger, CCHC-type [Interproscan]. 0.04 OrthoFinder
SymbC1.scaffold1790.1 1790.1 Hypothetical protein 0.03 OrthoFinder
SymbC1.scaffold2028.3 2028.3 Integrase, catalytic core [Interproscan]. 0.05 OrthoFinder
SymbC1.scaffold2072.2 2072.2 Zinc finger, CCHC-type [Interproscan]. 0.03 OrthoFinder
SymbC1.scaffold2374.4 2374.4 Hypothetical protein 0.08 OrthoFinder
SymbC1.scaffold277.5 277.5 Zinc finger, CCHC-type [Interproscan]. 0.03 OrthoFinder
SymbC1.scaffold329.2 329.2 Reverse transcriptase, RNA-dependent DNA polymerase... 0.04 OrthoFinder
SymbC1.scaffold3297.5 3297.5 Zinc finger, CCHC-type [Interproscan]. 0.05 OrthoFinder
SymbC1.scaffold372.4 372.4 Hypothetical protein 0.04 OrthoFinder
SymbC1.scaffold5583.1 5583.1 Hypothetical protein 0.05 OrthoFinder
SymbC1.scaffold6253.2 6253.2 Zinc finger, CCHC-type [Interproscan]. 0.04 OrthoFinder
SymbC1.scaffold692.1 692.1 Hypothetical protein 0.04 OrthoFinder
SymbC1.scaffold6954.1 6954.1 Hypothetical protein 0.07 OrthoFinder
SymbC1.scaffold7099.2 7099.2 Hypothetical protein 0.04 OrthoFinder
SymbC1.scaffold7159.1 7159.1 Reverse transcriptase, RNA-dependent DNA polymerase... 0.05 OrthoFinder
SymbC1.scaffold721.4 721.4 Hypothetical protein 0.08 OrthoFinder
SymbC1.scaffold7247.3 7247.3 Zinc finger, CCHC-type [Interproscan]. 0.03 OrthoFinder
SymbC1.scaffold7411.1 7411.1 Hypothetical protein 0.03 OrthoFinder
SymbC1.scaffold8751.1 8751.1 Hypothetical protein 0.04 OrthoFinder
SymbC1.scaffold8765.4 8765.4 Hypothetical protein 0.08 OrthoFinder
SymbC1.scaffold9481.1 9481.1 Hypothetical protein 0.05 OrthoFinder
SymbC1.scaffold9803.2 9803.2 Zinc finger, CCHC-type [Interproscan]. 0.04 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003857 3-hydroxyacyl-CoA dehydrogenase activity IEP Enrichment
BP GO:0006082 organic acid metabolic process IEP Enrichment
BP GO:0006541 glutamine metabolic process IEP Enrichment
BP GO:0006542 glutamine biosynthetic process IEP Enrichment
BP GO:0008360 regulation of cell shape IEP Enrichment
MF GO:0015002 obsolete heme-copper terminal oxidase activity IEP Enrichment
MF GO:0016209 antioxidant activity IEP Enrichment
BP GO:0019752 carboxylic acid metabolic process IEP Enrichment
BP GO:0022603 regulation of anatomical structure morphogenesis IEP Enrichment
BP GO:0022604 regulation of cell morphogenesis IEP Enrichment
BP GO:0043436 oxoacid metabolic process IEP Enrichment
BP GO:0050793 regulation of developmental process IEP Enrichment
InterPro domains Description Start Stop
IPR001878 Znf_CCHC 330 345
No external refs found!