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  5. SymbC1.scaffold3768.3

SymbC1.scaffold3768.3 (3768.3)


Aliases : 3768.3

Description : HAT (Half-A-TPR) repeat; Suppressor of forked [Interproscan].


Gene families : OG_01_0001985 (OrthoFinder) Phylogenetic Tree(s): OG0001985_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold3768.3
Cluster HCCA: Cluster_80

Target Alias Description ECC score Gene Family Method Actions
Cz12g18090.t1 No alias HAT (Half-A-TPR) repeat [Interproscan]. 0.02 OrthoFinder
OT_07G03650.1 No alias HAT (Half-A-TPR) repeat [Interproscan]. 0.02 OrthoFinder
XM_003057404.1 MicpuC2_32546, 32546 HAT (Half-A-TPR) repeat; Tetratricopeptide repeat [Interproscan]. 0.02 OrthoFinder
lcl|LHPG02000004.1_cds_PRW59332.1_7330 PRW59332 Crooked neck 1 0.01 OrthoFinder

Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEA Interproscan
BP GO:0006396 RNA processing IEA Interproscan
BP GO:0006397 mRNA processing IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000139 Golgi membrane IEP Enrichment
MF GO:0004843 thiol-dependent deubiquitinase IEP Enrichment
MF GO:0005338 nucleotide-sugar transmembrane transporter activity IEP Enrichment
CC GO:0005887 integral component of plasma membrane IEP Enrichment
MF GO:0008234 cysteine-type peptidase activity IEP Enrichment
MF GO:0008242 omega peptidase activity IEP Enrichment
BP GO:0009262 deoxyribonucleotide metabolic process IEP Enrichment
BP GO:0009263 deoxyribonucleotide biosynthetic process IEP Enrichment
MF GO:0015099 nickel cation transmembrane transporter activity IEP Enrichment
MF GO:0015165 pyrimidine nucleotide-sugar transmembrane transporter activity IEP Enrichment
BP GO:0015675 nickel cation transport IEP Enrichment
BP GO:0015780 nucleotide-sugar transmembrane transport IEP Enrichment
MF GO:0016160 amylase activity IEP Enrichment
MF GO:0016161 beta-amylase activity IEP Enrichment
MF GO:0016462 pyrophosphatase activity IEP Enrichment
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Enrichment
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Enrichment
MF GO:0017111 nucleoside-triphosphatase activity IEP Enrichment
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Enrichment
MF GO:0030151 molybdenum ion binding IEP Enrichment
CC GO:0031226 intrinsic component of plasma membrane IEP Enrichment
BP GO:0035444 nickel cation transmembrane transport IEP Enrichment
MF GO:0050660 flavin adenine dinucleotide binding IEP Enrichment
BP GO:0090481 pyrimidine nucleotide-sugar transmembrane transport IEP Enrichment
CC GO:0098588 bounding membrane of organelle IEP Enrichment
MF GO:0101005 deubiquitinase activity IEP Enrichment
InterPro domains Description Start Stop
IPR008847 Suf 208 332
IPR003107 HAT 94 119
No external refs found!