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  5. SymbC1.scaffold3612.1

SymbC1.scaffold3612.1 (3612.1)


Aliases : 3612.1

Description : Zinc finger, CCHC-type [Interproscan].


Gene families : OG_01_0000058 (OrthoFinder) Phylogenetic Tree(s): OG0000058_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold3612.1
Cluster HCCA: Cluster_194

Target Alias Description ECC score Gene Family Method Actions
SymbC1.scaffold10380.1 10380.1 Integrase, catalytic core [Interproscan]. 0.03 OrthoFinder
SymbC1.scaffold124.6 124.6 Integrase, catalytic core [Interproscan]. 0.02 OrthoFinder
SymbC1.scaffold12679.1 12679.1 Zinc finger, CCHC-type [Interproscan]. 0.04 OrthoFinder
SymbC1.scaffold1790.1 1790.1 Hypothetical protein 0.05 OrthoFinder
SymbC1.scaffold1947.9 1947.9 Hypothetical protein 0.04 OrthoFinder
SymbC1.scaffold2072.2 2072.2 Zinc finger, CCHC-type [Interproscan]. 0.03 OrthoFinder
SymbC1.scaffold2297.4 2297.4 Hypothetical protein 0.02 OrthoFinder
SymbC1.scaffold2374.4 2374.4 Hypothetical protein 0.07 OrthoFinder
SymbC1.scaffold280.3 280.3 Reverse transcriptase, RNA-dependent DNA polymerase... 0.06 OrthoFinder
SymbC1.scaffold329.2 329.2 Reverse transcriptase, RNA-dependent DNA polymerase... 0.07 OrthoFinder
SymbC1.scaffold3309.1 3309.1 Reverse transcriptase, RNA-dependent DNA polymerase... 0.03 OrthoFinder
SymbC1.scaffold3641.3 3641.3 Hypothetical protein 0.05 OrthoFinder
SymbC1.scaffold372.4 372.4 Hypothetical protein 0.03 OrthoFinder
SymbC1.scaffold4098.6 4098.6 Zinc finger, CCHC-type [Interproscan]. 0.05 OrthoFinder
SymbC1.scaffold4165.2 4165.2 Zinc finger, CCHC-type [Interproscan]. 0.03 OrthoFinder
SymbC1.scaffold5249.3 5249.3 Zinc finger, CCHC-type [Interproscan]. 0.04 OrthoFinder
SymbC1.scaffold550.3 550.3 Zinc finger, CCHC-type [Interproscan]. 0.03 OrthoFinder
SymbC1.scaffold6253.2 6253.2 Zinc finger, CCHC-type [Interproscan]. 0.06 OrthoFinder
SymbC1.scaffold692.1 692.1 Hypothetical protein 0.03 OrthoFinder
SymbC1.scaffold6954.1 6954.1 Hypothetical protein 0.05 OrthoFinder
SymbC1.scaffold721.4 721.4 Hypothetical protein 0.08 OrthoFinder
SymbC1.scaffold7411.1 7411.1 Hypothetical protein 0.03 OrthoFinder
SymbC1.scaffold7569.1 7569.1 Reverse transcriptase, RNA-dependent DNA polymerase;... 0.03 OrthoFinder
SymbC1.scaffold8751.1 8751.1 Hypothetical protein 0.06 OrthoFinder
SymbC1.scaffold8765.4 8765.4 Hypothetical protein 0.06 OrthoFinder
SymbC1.scaffold9481.1 9481.1 Hypothetical protein 0.04 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000723 telomere maintenance IEP Enrichment
MF GO:0004356 glutamate-ammonia ligase activity IEP Enrichment
BP GO:0006541 glutamine metabolic process IEP Enrichment
BP GO:0006542 glutamine biosynthetic process IEP Enrichment
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Enrichment
BP GO:0009064 glutamine family amino acid metabolic process IEP Enrichment
BP GO:0009084 glutamine family amino acid biosynthetic process IEP Enrichment
BP GO:0009235 cobalamin metabolic process IEP Enrichment
BP GO:0009236 cobalamin biosynthetic process IEP Enrichment
MF GO:0016211 ammonia ligase activity IEP Enrichment
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Enrichment
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP Enrichment
MF GO:0016880 acid-ammonia (or amide) ligase activity IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
BP GO:0032200 telomere organization IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
BP GO:0060249 anatomical structure homeostasis IEP Enrichment
BP GO:0071586 CAAX-box protein processing IEP Enrichment
BP GO:1901607 alpha-amino acid biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR001878 Znf_CCHC 108 124
No external refs found!