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  5. SymbC1.scaffold3479.3

SymbC1.scaffold3479.3 (3479.3)


Aliases : 3479.3

Description : Thrombospondin type-1 (TSP1) repeat [Interproscan].


Gene families : OG_01_0002877 (OrthoFinder) Phylogenetic Tree(s): OG0002877_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold3479.3
Cluster HCCA: Cluster_98

Target Alias Description ECC score Gene Family Method Actions
SymbC1.scaffold1789.2 1789.2 Hypothetical protein 0.03 OrthoFinder
SymbC1.scaffold7425.2 7425.2 Thrombospondin type-1 (TSP1) repeat [Interproscan]. 0.01 OrthoFinder
SymbC1.scaffold745.1 745.1 Thrombospondin type-1 (TSP1) repeat [Interproscan]. 0.04 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004175 endopeptidase activity IEP Enrichment
MF GO:0004222 metalloendopeptidase activity IEP Enrichment
MF GO:0008237 metallopeptidase activity IEP Enrichment
InterPro domains Description Start Stop
IPR000884 TSP1_rpt 231 269
IPR000884 TSP1_rpt 285 330
IPR000884 TSP1_rpt 33 82
No external refs found!