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  5. SymbC1.scaffold3432.4

SymbC1.scaffold3432.4 (3432.4)


Aliases : 3432.4

Description : RNA recognition motif domain [Interproscan].


Gene families : OG_01_0000905 (OrthoFinder) Phylogenetic Tree(s): OG0000905_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold3432.4
Cluster HCCA: Cluster_68

Target Alias Description ECC score Gene Family Method Actions
Cre10.g466450 30789814 No description available 0.01 OrthoFinder
Cz01g09300.t1 No alias RNA recognition motif domain [Interproscan]. 0.01 OrthoFinder
OT_05G05100.1 No alias RNA recognition motif domain [Interproscan]. 0.01 OrthoFinder
XM_002505110.1 MICPUN_102989, 102989 RNA recognition motif domain [Interproscan]. 0.01 OrthoFinder
lcl|LHPG02000005.1_cds_PRW58178.1_8002 PRW58178 RNA-binding domain-containing 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation IEP Enrichment
MF GO:0003972 RNA ligase (ATP) activity IEP Enrichment
BP GO:0006388 tRNA splicing, via endonucleolytic cleavage and ligation IEP Enrichment
BP GO:0008033 tRNA processing IEP Enrichment
BP GO:0008380 RNA splicing IEP Enrichment
MF GO:0008452 RNA ligase activity IEP Enrichment
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP Enrichment
BP GO:0018193 peptidyl-amino acid modification IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR000504 RRM_dom 501 567
IPR000504 RRM_dom 309 376
IPR000504 RRM_dom 107 171
IPR000504 RRM_dom 210 275
No external refs found!