SymbC1.scaffold3430.2 (3430.2)

Aliases : 3430.2

Description : DEAD/DEAH box helicase domain; Domain of unknown function DUF1605; Helicase-associated domain; Helicase, C-terminal [Interproscan].

Gene families : OG_01_0000129 (OrthoFinder) Phylogenetic Tree(s): OG0000129_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: SymbC1.scaffold3430.2
Cluster	HCCA: Cluster_149

Target	Alias	Description	ECC score	Gene Family Method
Cpa\|evm.model.tig00000786.1	tig00000786_g4048.t1	DExH-box ATP-dependent RNA helicase DExH3 OS=Arabidopsis thaliana	0.01	OrthoFinder
Cre03.g171650	30786928	DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis thaliana	0.03	OrthoFinder
EOD37379	No alias	Helicase, C-terminal; Helicase-associated domain [Interproscan].	0.01	OrthoFinder
OT_18G01660.1	No alias	Helicase-associated domain; Helicase, C-terminal; Domain...	0.01	OrthoFinder
PTI_28G00540.1	No alias	Helicase, C-terminal; Helicase-associated domain; Domain...	0.01	OrthoFinder
XM_002500677.1	MICPUN_65643, 65643	Helicase, C-terminal; Helicase-associated domain;...	0.02	OrthoFinder
XM_003054755.1	MicpuC2_45131, 45131	Helicase, C-terminal; Helicase-associated domain; Domain...	0.02	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004386	helicase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0008094	ATPase, acting on DNA	None	Extended
MF	GO:0016887	ATPase	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR011545	DEAD/DEAH_box_helicase_dom	103	274
IPR007502	Helicase-assoc_dom	567	643
IPR001650	Helicase_C	383	503
IPR011709	DUF1605	731	835

External Links

No external refs found!