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  5. Cpa|evm.model.tig00020563.151

Cpa|evm.model.tig00020563.151 (tig00020563_g11353.t1)


Aliases : tig00020563_g11353.t1

Description : RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm accessory ribonucleoprotein complex.Sm-E component


Gene families : OG_01_0002761 (OrthoFinder) Phylogenetic Tree(s): OG0002761_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00020563.151
Cluster HCCA: Cluster_105

Target Alias Description ECC score Gene Family Method Actions
Cre08.g385200 30773598 RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.07 OrthoFinder
Dusal.0122s00015.1 33203032 LSM domain, eukaryotic/archaea-type [Interproscan]. 0.02 OrthoFinder
EOD21539 No alias LSM domain, eukaryotic/archaea-type [Interproscan]. 0.03 OrthoFinder
EOD22134 No alias Small nuclear ribonucleo protein [Ensembl]. 0.03 OrthoFinder
PTI_21G00720.1 No alias LSM domain, eukaryotic/archaea-type [Interproscan]. 0.02 OrthoFinder
Sro194_g083010.1 Contig237.g2896 Small nuclear ribonucleoprotein E 0.05 OrthoFinder
Sro194_g083060.1 Contig237.g2901 Small nuclear ribonucleoprotein E 0.05 OrthoFinder
Vocar.0008s0078.1 32897195 LSM domain, eukaryotic/archaea-type [Interproscan]. 0.02 OrthoFinder
XM_002505542.1 MICPUN_63767, 63767 LSM domain, eukaryotic/archaea-type [Interproscan]. 0.03 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000339 RNA cap binding IEP Enrichment
MF GO:0000340 RNA 7-methylguanosine cap binding IEP Enrichment
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003678 DNA helicase activity IEP Enrichment
MF GO:0003924 GTPase activity IEP Enrichment
MF GO:0004109 coproporphyrinogen oxidase activity IEP Enrichment
MF GO:0004298 threonine-type endopeptidase activity IEP Enrichment
MF GO:0004379 glycylpeptide N-tetradecanoyltransferase activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
CC GO:0005789 endoplasmic reticulum membrane IEP Enrichment
CC GO:0005839 proteasome core complex IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006778 porphyrin-containing compound metabolic process IEP Enrichment
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP Enrichment
BP GO:0008380 RNA splicing IEP Enrichment
MF GO:0015098 molybdate ion transmembrane transporter activity IEP Enrichment
BP GO:0015689 molybdate ion transport IEP Enrichment
MF GO:0016410 N-acyltransferase activity IEP Enrichment
MF GO:0016462 pyrophosphatase activity IEP Enrichment
MF GO:0016634 oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor IEP Enrichment
MF GO:0016787 hydrolase activity IEP Enrichment
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Enrichment
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Enrichment
MF GO:0017111 nucleoside-triphosphatase activity IEP Enrichment
MF GO:0019107 myristoyltransferase activity IEP Enrichment
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
BP GO:0033013 tetrapyrrole metabolic process IEP Enrichment
BP GO:0033014 tetrapyrrole biosynthetic process IEP Enrichment
CC GO:0034464 BBSome IEP Enrichment
MF GO:0070003 threonine-type peptidase activity IEP Enrichment
InterPro domains Description Start Stop
IPR001163 LSM_dom_euk/arc 18 82
No external refs found!