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Aliases : 329.2
Description : Reverse transcriptase, RNA-dependent DNA polymerase [Interproscan].
Gene families : OG_01_0000058 (OrthoFinder) Phylogenetic Tree(s): OG0000058_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: SymbC1.scaffold329.2 | |
| Cluster | HCCA: Cluster_195 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| SymbC1.scaffold10380.1 | 10380.1 | Integrase, catalytic core [Interproscan]. | 0.06 | OrthoFinder | |
| SymbC1.scaffold1555.1 | 1555.1 | Zinc finger, CCHC-type [Interproscan]. | 0.04 | OrthoFinder | |
| SymbC1.scaffold1697.5 | 1697.5 | Hypothetical protein | 0.02 | OrthoFinder | |
| SymbC1.scaffold2072.2 | 2072.2 | Zinc finger, CCHC-type [Interproscan]. | 0.03 | OrthoFinder | |
| SymbC1.scaffold277.5 | 277.5 | Zinc finger, CCHC-type [Interproscan]. | 0.03 | OrthoFinder | |
| SymbC1.scaffold280.3 | 280.3 | Reverse transcriptase, RNA-dependent DNA polymerase... | 0.03 | OrthoFinder | |
| SymbC1.scaffold3309.1 | 3309.1 | Reverse transcriptase, RNA-dependent DNA polymerase... | 0.03 | OrthoFinder | |
| SymbC1.scaffold3612.1 | 3612.1 | Zinc finger, CCHC-type [Interproscan]. | 0.07 | OrthoFinder | |
| SymbC1.scaffold3641.3 | 3641.3 | Hypothetical protein | 0.04 | OrthoFinder | |
| SymbC1.scaffold372.4 | 372.4 | Hypothetical protein | 0.02 | OrthoFinder | |
| SymbC1.scaffold3876.2 | 3876.2 | Zinc finger, CCHC-type [Interproscan]. | 0.04 | OrthoFinder | |
| SymbC1.scaffold4098.6 | 4098.6 | Zinc finger, CCHC-type [Interproscan]. | 0.07 | OrthoFinder | |
| SymbC1.scaffold4165.2 | 4165.2 | Zinc finger, CCHC-type [Interproscan]. | 0.04 | OrthoFinder | |
| SymbC1.scaffold5249.3 | 5249.3 | Zinc finger, CCHC-type [Interproscan]. | 0.03 | OrthoFinder | |
| SymbC1.scaffold6253.2 | 6253.2 | Zinc finger, CCHC-type [Interproscan]. | 0.07 | OrthoFinder | |
| SymbC1.scaffold692.1 | 692.1 | Hypothetical protein | 0.02 | OrthoFinder | |
| SymbC1.scaffold6954.1 | 6954.1 | Hypothetical protein | 0.03 | OrthoFinder | |
| SymbC1.scaffold7099.2 | 7099.2 | Hypothetical protein | 0.05 | OrthoFinder | |
| SymbC1.scaffold721.4 | 721.4 | Hypothetical protein | 0.06 | OrthoFinder | |
| SymbC1.scaffold7247.3 | 7247.3 | Zinc finger, CCHC-type [Interproscan]. | 0.04 | OrthoFinder | |
| SymbC1.scaffold7569.1 | 7569.1 | Reverse transcriptase, RNA-dependent DNA polymerase;... | 0.02 | OrthoFinder | |
| SymbC1.scaffold7700.2 | 7700.2 | Hypothetical protein | 0.02 | OrthoFinder | |
| SymbC1.scaffold7750.1 | 7750.1 | Hypothetical protein | 0.03 | OrthoFinder | |
| SymbC1.scaffold8765.4 | 8765.4 | Hypothetical protein | 0.07 | OrthoFinder | |
| SymbC1.scaffold9803.2 | 9803.2 | Zinc finger, CCHC-type [Interproscan]. | 0.04 | OrthoFinder |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003729 | mRNA binding | IEP | Enrichment |
| MF | GO:0003954 | NADH dehydrogenase activity | IEP | Enrichment |
| MF | GO:0003955 | NAD(P)H dehydrogenase (quinone) activity | IEP | Enrichment |
| MF | GO:0005436 | sodium:phosphate symporter activity | IEP | Enrichment |
| CC | GO:0005694 | chromosome | IEP | Enrichment |
| BP | GO:0005984 | disaccharide metabolic process | IEP | Enrichment |
| BP | GO:0005985 | sucrose metabolic process | IEP | Enrichment |
| BP | GO:0006536 | glutamate metabolic process | IEP | Enrichment |
| BP | GO:0006537 | glutamate biosynthetic process | IEP | Enrichment |
| BP | GO:0006817 | phosphate ion transport | IEP | Enrichment |
| MF | GO:0008137 | NADH dehydrogenase (ubiquinone) activity | IEP | Enrichment |
| MF | GO:0008661 | 1-deoxy-D-xylulose-5-phosphate synthase activity | IEP | Enrichment |
| MF | GO:0015081 | sodium ion transmembrane transporter activity | IEP | Enrichment |
| MF | GO:0015291 | secondary active transmembrane transporter activity | IEP | Enrichment |
| MF | GO:0015294 | solute:cation symporter activity | IEP | Enrichment |
| MF | GO:0015370 | solute:sodium symporter activity | IEP | Enrichment |
| MF | GO:0015930 | glutamate synthase activity | IEP | Enrichment |
| MF | GO:0016157 | sucrose synthase activity | IEP | Enrichment |
| MF | GO:0016655 | oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | IEP | Enrichment |
| MF | GO:0016744 | transketolase or transaldolase activity | IEP | Enrichment |
| MF | GO:0016856 | racemase and epimerase activity, acting on hydroxy acids and derivatives | IEP | Enrichment |
| MF | GO:0030674 | protein-macromolecule adaptor activity | IEP | Enrichment |
| MF | GO:0032182 | ubiquitin-like protein binding | IEP | Enrichment |
| MF | GO:0035251 | UDP-glucosyltransferase activity | IEP | Enrichment |
| MF | GO:0035596 | methylthiotransferase activity | IEP | Enrichment |
| MF | GO:0042802 | identical protein binding | IEP | Enrichment |
| MF | GO:0043130 | ubiquitin binding | IEP | Enrichment |
| BP | GO:0043650 | dicarboxylic acid biosynthetic process | IEP | Enrichment |
| BP | GO:0044341 | sodium-dependent phosphate transport | IEP | Enrichment |
| MF | GO:0046527 | glucosyltransferase activity | IEP | Enrichment |
| MF | GO:0050043 | lactate racemase activity | IEP | Enrichment |
| MF | GO:0050136 | NADH dehydrogenase (quinone) activity | IEP | Enrichment |
| MF | GO:0050497 | alkylthioltransferase activity | IEP | Enrichment |
| MF | GO:0051536 | iron-sulfur cluster binding | IEP | Enrichment |
| MF | GO:0051540 | metal cluster binding | IEP | Enrichment |
| MF | GO:0060090 | molecular adaptor activity | IEP | Enrichment |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR013103 | RVT_2 | 1607 | 1830 |
| No external refs found! |