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  5. SymbC1.scaffold3239.6

SymbC1.scaffold3239.6 (3239.6)


Aliases : 3239.6

Description : ShKT domain; PAN/Apple domain [Interproscan].


Gene families : OG_01_0000009 (OrthoFinder) Phylogenetic Tree(s): OG0000009_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold3239.6
Cluster HCCA: Cluster_26

Target Alias Description ECC score Gene Family Method Actions
Dusal.0095s00016.1 33190292 Hypothetical protein 0.02 OrthoFinder
Sro1062_g236900.1 Contig721.g8296 Prolyl 4-hydroxylase subunit alpha-1 0.01 OrthoFinder
SymbC1.scaffold3234.11 3234.11 Hypothetical protein 0.02 OrthoFinder
Transcript_contig_54096 54096 Oxoglutarate/iron-dependent dioxygenase [Interproscan]. 0.01 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004601 peroxidase activity IEP Enrichment
MF GO:0005525 GTP binding IEP Enrichment
BP GO:0006605 protein targeting IEP Enrichment
BP GO:0006612 protein targeting to membrane IEP Enrichment
BP GO:0006613 cotranslational protein targeting to membrane IEP Enrichment
BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEP Enrichment
BP GO:0006979 response to oxidative stress IEP Enrichment
MF GO:0008312 7S RNA binding IEP Enrichment
MF GO:0015035 protein-disulfide reductase activity IEP Enrichment
MF GO:0015036 disulfide oxidoreductase activity IEP Enrichment
MF GO:0019001 guanyl nucleotide binding IEP Enrichment
MF GO:0032561 guanyl ribonucleotide binding IEP Enrichment
BP GO:0033365 protein localization to organelle IEP Enrichment
BP GO:0034613 cellular protein localization IEP Enrichment
BP GO:0045047 protein targeting to ER IEP Enrichment
CC GO:0048500 signal recognition particle IEP Enrichment
BP GO:0051668 localization within membrane IEP Enrichment
BP GO:0070727 cellular macromolecule localization IEP Enrichment
BP GO:0070972 protein localization to endoplasmic reticulum IEP Enrichment
BP GO:0072594 establishment of protein localization to organelle IEP Enrichment
BP GO:0072599 establishment of protein localization to endoplasmic reticulum IEP Enrichment
BP GO:0072657 protein localization to membrane IEP Enrichment
BP GO:0090150 establishment of protein localization to membrane IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR003582 ShKT_dom 29 62
IPR003609 Pan_app 247 276
IPR003609 Pan_app 169 200
No external refs found!