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  5. SymbC1.scaffold3230.2

SymbC1.scaffold3230.2 (3230.2)


Aliases : 3230.2

Description : Zinc finger, CCHC-type [Interproscan].


Gene families : OG_01_0000232 (OrthoFinder) Phylogenetic Tree(s): OG0000232_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold3230.2
Cluster HCCA: Cluster_55

Target Alias Description ECC score Gene Family Method Actions
SymbC1.scaffold1120.2 1120.2 Zinc finger, CCHC-type [Interproscan]. 0.04 OrthoFinder
SymbC1.scaffold15374.1 15374.1 Zinc finger, CCHC-type [Interproscan]. 0.04 OrthoFinder
SymbC1.scaffold189.5 189.5 Reverse transcriptase, RNA-dependent DNA polymerase... 0.04 OrthoFinder
SymbC1.scaffold1910.3 1910.3 Zinc finger, CCHC-type; Reverse transcriptase,... 0.03 OrthoFinder
SymbC1.scaffold2314.3 2314.3 Zinc finger, CCHC-type; Reverse transcriptase,... 0.04 OrthoFinder
SymbC1.scaffold2330.3 2330.3 Zinc finger, CCHC-type; Reverse transcriptase,... 0.03 OrthoFinder
SymbC1.scaffold383.6 383.6 Zinc finger, CCHC-type; Reverse transcriptase,... 0.07 OrthoFinder
SymbC1.scaffold3880.1 3880.1 Zinc finger, CCHC-type; Reverse transcriptase,... 0.04 OrthoFinder
SymbC1.scaffold3995.1 3995.1 Hypothetical protein 0.04 OrthoFinder
SymbC1.scaffold4353.2 4353.2 Zinc finger, CCHC-type; Reverse transcriptase,... 0.04 OrthoFinder
SymbC1.scaffold4495.1 4495.1 Zinc finger, CCHC-type; Reverse transcriptase,... 0.01 OrthoFinder
SymbC1.scaffold5287.1 5287.1 Zinc finger, CCHC-type [Interproscan]. 0.04 OrthoFinder
SymbC1.scaffold541.2 541.2 Zinc finger, CCHC-type [Interproscan]. 0.08 OrthoFinder
SymbC1.scaffold5672.4 5672.4 Zinc finger, CCHC-type; Reverse transcriptase,... 0.03 OrthoFinder
SymbC1.scaffold5752.1 5752.1 Zinc finger, CCHC-type; Reverse transcriptase,... 0.08 OrthoFinder
SymbC1.scaffold6366.1 6366.1 Zinc finger, CCHC-type; Reverse transcriptase,... 0.03 OrthoFinder
SymbC1.scaffold9224.2 9224.2 Zinc finger, CCHC-type; Reverse transcriptase,... 0.03 OrthoFinder
SymbC1.scaffold9962.1 9962.1 Zinc finger, CCHC-type; Reverse transcriptase,... 0.04 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003911 DNA ligase (NAD+) activity IEP Enrichment
MF GO:0004019 adenylosuccinate synthase activity IEP Enrichment
MF GO:0004526 ribonuclease P activity IEP Enrichment
MF GO:0004549 tRNA-specific ribonuclease activity IEP Enrichment
MF GO:0005525 GTP binding IEP Enrichment
BP GO:0006260 DNA replication IEP Enrichment
BP GO:0006873 cellular ion homeostasis IEP Enrichment
BP GO:0006875 cellular metal ion homeostasis IEP Enrichment
BP GO:0006879 cellular iron ion homeostasis IEP Enrichment
MF GO:0008649 rRNA methyltransferase activity IEP Enrichment
MF GO:0008759 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity IEP Enrichment
BP GO:0009245 lipid A biosynthetic process IEP Enrichment
MF GO:0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor IEP Enrichment
MF GO:0016857 racemase and epimerase activity, acting on carbohydrates and derivatives IEP Enrichment
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP Enrichment
MF GO:0019001 guanyl nucleotide binding IEP Enrichment
MF GO:0019213 deacetylase activity IEP Enrichment
BP GO:0019725 cellular homeostasis IEP Enrichment
BP GO:0022402 cell cycle process IEP Enrichment
BP GO:0030003 cellular cation homeostasis IEP Enrichment
MF GO:0032561 guanyl ribonucleotide binding IEP Enrichment
MF GO:0032977 membrane insertase activity IEP Enrichment
BP GO:0042592 homeostatic process IEP Enrichment
BP GO:0046493 lipid A metabolic process IEP Enrichment
BP GO:0046916 cellular transition metal ion homeostasis IEP Enrichment
BP GO:0051304 chromosome separation IEP Enrichment
BP GO:0055072 iron ion homeostasis IEP Enrichment
BP GO:0055082 cellular chemical homeostasis IEP Enrichment
BP GO:0065008 regulation of biological quality IEP Enrichment
MF GO:0140096 catalytic activity, acting on a protein IEP Enrichment
MF GO:0140102 catalytic activity, acting on a rRNA IEP Enrichment
MF GO:0140104 molecular carrier activity IEP Enrichment
MF GO:0140597 protein carrier activity IEP Enrichment
BP GO:1901269 lipooligosaccharide metabolic process IEP Enrichment
BP GO:1901271 lipooligosaccharide biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR001878 Znf_CCHC 290 305
No external refs found!