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  5. SymbC1.scaffold3218.1

SymbC1.scaffold3218.1 (3218.1)


Aliases : 3218.1

Description : Chlorophyll A-B binding protein; Alcohol dehydrogenase, C-terminal; Polyketide synthase, dehydratase domain [Interproscan].


Gene families : OG_01_0000078 (OrthoFinder) Phylogenetic Tree(s): OG0000078_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold3218.1
Cluster HCCA: Cluster_45

Target Alias Description ECC score Gene Family Method Actions
SymbC1.scaffold1899.3 1899.3 Beta-ketoacyl synthase, C-terminal; Beta-ketoacyl... 0.03 OrthoFinder
SymbC1.scaffold3449.3 3449.3 Beta-ketoacyl synthase, C-terminal; Cyclic... 0.04 OrthoFinder
SymbC1.scaffold8952.1 8952.1 Beta-ketoacyl synthase, N-terminal [Interproscan]. 0.04 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0055114 obsolete oxidation-reduction process IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Enrichment
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Enrichment
BP GO:0000398 mRNA splicing, via spliceosome IEP Enrichment
CC GO:0000786 nucleosome IEP Enrichment
MF GO:0004427 inorganic diphosphatase activity IEP Enrichment
MF GO:0004478 methionine adenosyltransferase activity IEP Enrichment
MF GO:0004518 nuclease activity IEP Enrichment
MF GO:0004611 phosphoenolpyruvate carboxykinase activity IEP Enrichment
MF GO:0004612 phosphoenolpyruvate carboxykinase (ATP) activity IEP Enrichment
MF GO:0005244 voltage-gated ion channel activity IEP Enrichment
MF GO:0005247 voltage-gated chloride channel activity IEP Enrichment
MF GO:0005253 anion channel activity IEP Enrichment
MF GO:0005254 chloride channel activity IEP Enrichment
CC GO:0005875 microtubule associated complex IEP Enrichment
BP GO:0006006 glucose metabolic process IEP Enrichment
BP GO:0006094 gluconeogenesis IEP Enrichment
BP GO:0006397 mRNA processing IEP Enrichment
BP GO:0006556 S-adenosylmethionine biosynthetic process IEP Enrichment
BP GO:0006821 chloride transport IEP Enrichment
MF GO:0008308 voltage-gated anion channel activity IEP Enrichment
BP GO:0008380 RNA splicing IEP Enrichment
MF GO:0009678 pyrophosphate hydrolysis-driven proton transmembrane transporter activity IEP Enrichment
MF GO:0015399 primary active transmembrane transporter activity IEP Enrichment
BP GO:0015977 carbon fixation IEP Enrichment
BP GO:0016071 mRNA metabolic process IEP Enrichment
MF GO:0016462 pyrophosphatase activity IEP Enrichment
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Enrichment
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Enrichment
MF GO:0016830 carbon-carbon lyase activity IEP Enrichment
MF GO:0016831 carboxy-lyase activity IEP Enrichment
MF GO:0016984 ribulose-bisphosphate carboxylase activity IEP Enrichment
MF GO:0017069 snRNA binding IEP Enrichment
MF GO:0017070 U6 snRNA binding IEP Enrichment
MF GO:0017111 nucleoside-triphosphatase activity IEP Enrichment
BP GO:0019319 hexose biosynthetic process IEP Enrichment
MF GO:0022804 active transmembrane transporter activity IEP Enrichment
MF GO:0022832 voltage-gated channel activity IEP Enrichment
MF GO:0022836 gated channel activity IEP Enrichment
CC GO:0030286 dynein complex IEP Enrichment
MF GO:0030623 U5 snRNA binding IEP Enrichment
CC GO:0032993 protein-DNA complex IEP Enrichment
BP GO:0044272 sulfur compound biosynthetic process IEP Enrichment
CC GO:0044815 DNA packaging complex IEP Enrichment
BP GO:0046364 monosaccharide biosynthetic process IEP Enrichment
BP GO:0046500 S-adenosylmethionine metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR020807 PKS_dehydratase 382 668
IPR022796 Chloroa_b-bind 129 172
IPR013149 ADH_C 980 1074
No external refs found!