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  5. SymbC1.scaffold3179.1

SymbC1.scaffold3179.1 (3179.1)


Aliases : 3179.1

Description : Ribosomal protein L5, N-terminal; Ribosomal protein L5, C-terminal [Interproscan].


Gene families : OG_01_0003656 (OrthoFinder) Phylogenetic Tree(s): OG0003656_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold3179.1
Cluster HCCA: Cluster_66

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020610.38 tig00020610_g11977.t1 Protein biosynthesis.cytosolic ribosome.large subunit... 0.05 OrthoFinder
Cre01.g027000 30788418, RPL11 Protein biosynthesis.cytosolic ribosome.large subunit... 0.1 OrthoFinder
Cz06g11020.t1 No alias Ribosomal protein L5, C-terminal; Ribosomal protein L5,... 0.11 OrthoFinder
Dusal.0453s00002.1 33187614 Ribosomal protein L5, C-terminal; Ribosomal protein L5,... 0.06 OrthoFinder
EOD19037 No alias Ribosomal protein L5, C-terminal; Ribosomal protein L5,... 0.03 OrthoFinder
OT_03G04560.1 No alias Ribosomal protein L5, N-terminal; Ribosomal protein L5,... 0.05 OrthoFinder
PTI_23G00120.1 No alias Ribosomal protein L5, C-terminal; Ribosomal protein L5,... 0.08 OrthoFinder
Sro673_g185180.1 Contig1386.g12783 60S ribosomal protein L11 (Fragment) 0.1 OrthoFinder
TP04G03730.1 No alias Ribosomal protein L5, C-terminal; Ribosomal protein L5,... 0.09 OrthoFinder
Vocar.0001s0942.1 32885998 Ribosomal protein L5, C-terminal; Ribosomal protein L5,... 0.06 OrthoFinder
XM_002507281.1 MICPUN_89807, 89807 Ribosomal protein L11 (RPL11) 0.04 OrthoFinder
lcl|LHPG02000013.1_cds_PRW44393.1_2191 PRW44393 60S ribosomal L11 0.1 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499115.1_8068 KAA8499115 60S ribosomal protein L11-2 0.07 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP Enrichment
MF GO:0005198 structural molecule activity IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005840 ribosome IEP Enrichment
BP GO:0006275 regulation of DNA replication IEP Enrichment
BP GO:0006412 translation IEP Enrichment
BP GO:0006486 protein glycosylation IEP Enrichment
BP GO:0006518 peptide metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
MF GO:0008375 acetylglucosaminyltransferase activity IEP Enrichment
MF GO:0008408 3'-5' exonuclease activity IEP Enrichment
BP GO:0009058 biosynthetic process IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
CC GO:0009521 photosystem IEP Enrichment
CC GO:0009523 photosystem II IEP Enrichment
CC GO:0009539 photosystem II reaction center IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
BP GO:0015979 photosynthesis IEP Enrichment
BP GO:0019538 protein metabolic process IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
BP GO:0043043 peptide biosynthetic process IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043228 non-membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Enrichment
BP GO:0043413 macromolecule glycosylation IEP Enrichment
BP GO:0043603 cellular amide metabolic process IEP Enrichment
BP GO:0043604 amide biosynthetic process IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0044249 cellular biosynthetic process IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0044267 cellular protein metabolic process IEP Enrichment
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Enrichment
BP GO:0070085 glycosylation IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
BP GO:1901564 organonitrogen compound metabolic process IEP Enrichment
BP GO:1901566 organonitrogen compound biosynthetic process IEP Enrichment
BP GO:1901576 organic substance biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR031310 Ribosomal_L5_N 7 60
IPR031309 Ribosomal_L5_C 64 162
No external refs found!