SymbC1.scaffold3151.2 (3151.2)

Aliases : 3151.2

Description : Reverse transcriptase, RNA-dependent DNA polymerase; Integrase, catalytic core [Interproscan].

Gene families : OG_01_0005516 (OrthoFinder) Phylogenetic Tree(s): OG0005516_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: SymbC1.scaffold3151.2
Cluster	HCCA: Cluster_7

Target	Alias	Description	ECC score	Gene Family Method	Actions
SymbC1.scaffold1948.1	1948.1	Reverse transcriptase, RNA-dependent DNA polymerase...	0.06	OrthoFinder
SymbC1.scaffold953.2	953.2	Reverse transcriptase, RNA-dependent DNA polymerase...	0.03	OrthoFinder

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015074	DNA integration	IEA	Interproscan
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0002161	aminoacyl-tRNA editing activity	IEP	Enrichment
MF	GO:0003676	nucleic acid binding	IEP	Enrichment
MF	GO:0003743	translation initiation factor activity	IEP	Enrichment
MF	GO:0003857	3-hydroxyacyl-CoA dehydrogenase activity	IEP	Enrichment
MF	GO:0003919	FMN adenylyltransferase activity	IEP	Enrichment
MF	GO:0004180	carboxypeptidase activity	IEP	Enrichment
MF	GO:0004185	serine-type carboxypeptidase activity	IEP	Enrichment
MF	GO:0004655	porphobilinogen synthase activity	IEP	Enrichment
MF	GO:0005539	glycosaminoglycan binding	IEP	Enrichment
BP	GO:0006631	fatty acid metabolic process	IEP	Enrichment
MF	GO:0008270	zinc ion binding	IEP	Enrichment
MF	GO:0008531	riboflavin kinase activity	IEP	Enrichment
MF	GO:0009002	serine-type D-Ala-D-Ala carboxypeptidase activity	IEP	Enrichment
MF	GO:0016627	oxidoreductase activity, acting on the CH-CH group of donors	IEP	Enrichment
CC	GO:0019867	outer membrane	IEP	Enrichment
MF	GO:0042834	peptidoglycan binding	IEP	Enrichment
MF	GO:0043169	cation binding	IEP	Enrichment
MF	GO:0046872	metal ion binding	IEP	Enrichment
MF	GO:0050660	flavin adenine dinucleotide binding	IEP	Enrichment
MF	GO:0070008	serine-type exopeptidase activity	IEP	Enrichment
MF	GO:0070566	adenylyltransferase activity	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR001584	Integrase_cat-core	583	682
IPR013103	RVT_2	1284	1490

External Links

No external refs found!