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  5. SymbC1.scaffold31298.1

SymbC1.scaffold31298.1 (31298.1)


Aliases : 31298.1

Description : Cold-shock protein, DNA-binding [Interproscan].


Gene families : OG_01_0000183 (OrthoFinder) Phylogenetic Tree(s): OG0000183_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold31298.1
Cluster HCCA: Cluster_183

Target Alias Description ECC score Gene Family Method Actions
PTI_15G01930.1 No alias Cold-shock protein, DNA-binding [Interproscan]. 0.02 OrthoFinder
SymbC1.scaffold21.326 21.326 Cold-shock protein, DNA-binding; Putative sensory... 0.05 OrthoFinder
Transcript_contig_79230 79230 Cold-shock protein, DNA-binding [Interproscan]. 0.01 OrthoFinder
lcl|LHPG02000021.1_cds_PRW20832.1_5075 PRW20832 Glycine-rich 2 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP Enrichment
MF GO:0004144 diacylglycerol O-acyltransferase activity IEP Enrichment
BP GO:0006783 heme biosynthetic process IEP Enrichment
BP GO:0006784 heme A biosynthetic process IEP Enrichment
BP GO:0006996 organelle organization IEP Enrichment
MF GO:0008374 O-acyltransferase activity IEP Enrichment
MF GO:0015288 porin activity IEP Enrichment
MF GO:0016411 acylglycerol O-acyltransferase activity IEP Enrichment
MF GO:0022829 wide pore channel activity IEP Enrichment
CC GO:0032993 protein-DNA complex IEP Enrichment
BP GO:0042168 heme metabolic process IEP Enrichment
CC GO:0044815 DNA packaging complex IEP Enrichment
BP GO:0045017 glycerolipid biosynthetic process IEP Enrichment
BP GO:0046160 heme a metabolic process IEP Enrichment
BP GO:0051276 chromosome organization IEP Enrichment
InterPro domains Description Start Stop
IPR002059 CSP_DNA-bd 56 117
No external refs found!