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  5. SymbC1.scaffold2867.6

SymbC1.scaffold2867.6 (2867.6)


Aliases : 2867.6

Description : Ribosomal protein S6e [Interproscan].


Gene families : OG_01_0002771 (OrthoFinder) Phylogenetic Tree(s): OG0002771_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold2867.6
Cluster HCCA: Cluster_66

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000704.73 tig00000704_g3357.t1 Protein biosynthesis.cytosolic ribosome.small subunit... 0.07 OrthoFinder
Cre09.g400650 30780656, RPS6 Protein biosynthesis.cytosolic ribosome.small subunit... 0.05 OrthoFinder
Cz06g36040.t1 No alias Ribosomal protein S6e [Interproscan]. 0.07 OrthoFinder
Dusal.0276s00013.1 33203073 Ribosomal protein S6e [Interproscan]. 0.03 OrthoFinder
EOD22278 No alias Ribosomal protein S6e [Interproscan]. 0.04 OrthoFinder
OT_03G02800.1 No alias Ribosomal protein S6e [Interproscan]. 0.06 OrthoFinder
PTI_03G02600.1 No alias Ribosomal protein S6e [Interproscan]. 0.07 OrthoFinder
Sro169_g075080.1 Contig4412.g33128 40S ribosomal protein S6 0.09 OrthoFinder
TP14G02490.1 No alias Ribosomal protein S6e [Interproscan]. 0.07 OrthoFinder
Transcript_contig_80061 80061 Ribosomal protein S6e [Interproscan]. 0.02 OrthoFinder
Vocar.0008s0246.1 32896957 Ribosomal protein S6e [Interproscan]. 0.03 OrthoFinder
XM_002499404.1 MICPUN_90125, 90125 Ribosomal protein S6e [Interproscan]. 0.06 OrthoFinder
XM_003055713.1 MicpuC2_49409, 49409 Ribosomal protein S6e [Interproscan]. 0.02 OrthoFinder
lcl|BLLF01000178.1_cds_GFH08697.1_3174 HaLaN_03704, GFH08697 40S ribosomal protein S6 0.05 OrthoFinder
lcl|LHPG02000012.1_cds_PRW44964.1_1851 PRW44964 40S ribosomal S6 isoform A 0.04 OrthoFinder
lcl|VRMN01000005.1_cds_KAA8494269.1_4133 KAA8494269 40S ribosomal protein S6 0.05 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000339 RNA cap binding IEP Enrichment
MF GO:0000340 RNA 7-methylguanosine cap binding IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003729 mRNA binding IEP Enrichment
CC GO:0005743 mitochondrial inner membrane IEP Enrichment
CC GO:0005750 mitochondrial respiratory chain complex III IEP Enrichment
BP GO:0006122 mitochondrial electron transport, ubiquinol to cytochrome c IEP Enrichment
MF GO:0008097 5S rRNA binding IEP Enrichment
CC GO:0008303 caspase complex IEP Enrichment
BP GO:0009060 aerobic respiration IEP Enrichment
CC GO:0015934 large ribosomal subunit IEP Enrichment
BP GO:0015980 energy derivation by oxidation of organic compounds IEP Enrichment
BP GO:0016255 attachment of GPI anchor to protein IEP Enrichment
BP GO:0019646 aerobic electron transport chain IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
CC GO:0019866 organelle inner membrane IEP Enrichment
BP GO:0022900 electron transport chain IEP Enrichment
BP GO:0022904 respiratory electron transport chain IEP Enrichment
CC GO:0031090 organelle membrane IEP Enrichment
CC GO:0031966 mitochondrial membrane IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
CC GO:0042765 GPI-anchor transamidase complex IEP Enrichment
CC GO:0044391 ribosomal subunit IEP Enrichment
CC GO:0045275 respiratory chain complex III IEP Enrichment
BP GO:0045333 cellular respiration IEP Enrichment
CC GO:0070069 cytochrome complex IEP Enrichment
CC GO:0098796 membrane protein complex IEP Enrichment
CC GO:0098798 mitochondrial protein-containing complex IEP Enrichment
CC GO:0098800 inner mitochondrial membrane protein complex IEP Enrichment
CC GO:0098803 respiratory chain complex IEP Enrichment
CC GO:0140534 endoplasmic reticulum protein-containing complex IEP Enrichment
CC GO:1902494 catalytic complex IEP Enrichment
CC GO:1905368 peptidase complex IEP Enrichment
CC GO:1905369 endopeptidase complex IEP Enrichment
CC GO:1990204 oxidoreductase complex IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR001377 Ribosomal_S6e 1 126
No external refs found!