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  5. SymbC1.scaffold282.3

SymbC1.scaffold282.3 (282.3)


Aliases : 282.3

Description : DNA photolyase, N-terminal; Cryptochrome/DNA photolyase, FAD-binding domain; WD40 repeat; TM2 domain; Sof1-like protein [Interproscan].


Gene families : OG_01_0000085 (OrthoFinder) Phylogenetic Tree(s): OG0000085_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold282.3
Cluster HCCA: Cluster_230

Target Alias Description ECC score Gene Family Method Actions
lcl|VRMN01000006.1_cds_KAA8493824.1_4586 KAA8493824 Cryptochrome DASH 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEP Enrichment
BP GO:0006397 mRNA processing IEP Enrichment
BP GO:0016071 mRNA metabolic process IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
InterPro domains Description Start Stop
IPR007287 Sof1 1076 1116
IPR007829 TM2 439 486
IPR005101 Cryptochr/Photolyase_FAD-bd 1426 1628
IPR006050 DNA_photolyase_N 1146 1293
IPR001680 WD40_repeat 1046 1075
IPR001680 WD40_repeat 1000 1032
IPR001680 WD40_repeat 828 858
No external refs found!