SymbC1.scaffold2720.1 (2720.1)

Aliases : 2720.1

Description : Glycosyltransferase, DXD sugar-binding motif; Ribosomal protein S15; Ribosomal protein S13/S15, N-terminal [Interproscan].

Gene families : OG_01_0003390 (OrthoFinder) Phylogenetic Tree(s): OG0003390_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: SymbC1.scaffold2720.1
Cluster	HCCA: Cluster_21

Target	Alias	Description	ECC score	Gene Family Method
Cre07.g331900	30774339, RPS13	Protein biosynthesis.cytosolic ribosome.small subunit...	0.09	OrthoFinder
Cz07g16040.t1	No alias	Ribosomal protein S15 [Interproscan].	0.05	OrthoFinder
Dusal.0017s00026.1	33200512	Ribosomal protein S15; Ribosomal protein S13/S15,...	0.05	OrthoFinder
EOD30715	No alias	Ribosomal protein S15; Ribosomal protein S13/S15,...	0.06	OrthoFinder
EOD34926	No alias	40S ribosomal protein S13 [Ensembl].	0.06	OrthoFinder
OT_01G03170.1	No alias	Ribosomal protein S13/S15, N-terminal; Ribosomal protein...	0.06	OrthoFinder
PTI_01G02690.1	No alias	Ribosomal protein S13/S15, N-terminal; Ribosomal protein...	0.07	OrthoFinder
Sro611_g175300.1	Contig1882.g16411	40S ribosomal protein S13	0.07	OrthoFinder
TP04G08460.1	No alias	Ribosomal protein S15; Ribosomal protein S13/S15,...	0.05	OrthoFinder
Vocar.0034s0079.1	32893040	Ribosomal protein S15; Ribosomal protein S13/S15,...	0.05	OrthoFinder
XM_002504263.1	MICPUN_108906, 108906	Ribosomal protein S15; Ribosomal protein S13/S15,...	0.06	OrthoFinder
XM_003063730.1	MicpuC2_49744, 49744	Ribosomal protein S13/S15, N-terminal; Ribosomal protein...	0.03	OrthoFinder
lcl\|BLLF01005706.1_cds_GFH31540.1_26017	HaLaN_30603, GFH31540	Ribosomal_S13_N domain-containing protein	0.05	OrthoFinder
lcl\|VRMN01000003.1_cds_KAA8495591.1_1589	KAA8495591	40S ribosomal protein S13	0.02	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR007577	GlycoTrfase_DXD_sugar-bd_CS	203	280
IPR012606	Ribosomal_S13/S15_N	1	60
IPR000589	Ribosomal_S15	74	145

External Links

No external refs found!

SymbC1.scaffold2720.1 (2720.1)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation